Protein

View in Explore
Genbank accession
QBX21528.1 [GenBank]
Protein name
capsid and scaffold protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MSIVTMTFNEHDFSDLIVIHDIRRDIGNETSLTLTDGPKIGAIVTDKTINPKYIEVDFSIWAEDRNTLKRKLAKYFETDSEAKLLFSDEPNVYYLARKTGKIPTREGRGYWSTGTVTFLIPDGVAHSTTYRRFDNPTVKSDRLAFRLKNNGTTDAFPIITVKHNSENGYLAAVNAKGATAIGNREEADTVSVKQSEMLLDFRDSKIGNALTSGTPNIGIMNDQNANPVFSGNIRKVNVWGRDHLELNGRGFSSLTWDIPNDSAGGVGSLNDYLWWRQIFWLGATNQYGAMKITVSDSNGQFLYGVETFKRSNGLDCEYNFMATDGKGGYNMIKQWRFTGTHWDYHNPFNESRGWSDLKRNDDRVTIYWFGTYNEFYIPEIKGKKSKKIHIAFSSIGNHPIVSHMYLDSFYYRKDHVSIAKDIPNRYPIGSTVVIDCEDDTITVDGMDRFGDRIQGSSWLKIPPGESELEIYCSSWIRNKPTVSIQFEERYL
Physico‐chemical
properties
protein length:491 AA
molecular weight: 55883,93400 Da
isoelectric point:6,28977
aromaticity:0,12016
hydropathy:-0,52953

Domains

Domains [InterPro]
DC_0420
STR
1–491
DC_0420
G3DSA:2.40.30.200
ATT
2–126
G3DSA:2.40.30.200 IPR054738
IPR006520
Unmapped
6–126
IPR006520
IPR008841
STR
21–119
IPR008841
QBX21528.1
1 491
Architecture
ATT
STR
ATT 1-126 | STR 127-491
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QBX21528.1
1 491
Domain Start End Length (AA) Confidence
N-terminal 1 193 193 0,9763
Central domain 194 392 200 0,2497
C-terminal 393 491 98 0,4959
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-193
Central
194-392
C-terminal
393-491

Taxonomy

  Name Taxonomy ID Lineage
Phage Streptococcus phage Javan577
[NCBI] 		2548269 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Streptococcus suis
[NCBI] 		1307 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Lactobacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QBX21528.1 [NCBI]
Genbank nucleotide accession
MK448812 [NCBI]
CDS location
range 30479 -> 31954
strand +
CDS
ATGAGTATCGTAACAATGACATTTAATGAGCATGATTTTTCGGATTTGATTGTTATCCACGATATTCGTCGTGATATTGGAAATGAAACTTCATTGACTTTAACGGATGGACCAAAGATTGGGGCGATTGTTACTGATAAAACAATTAATCCAAAATATATTGAAGTGGATTTCTCTATATGGGCAGAGGATAGAAATACCTTGAAGCGTAAACTTGCAAAGTATTTTGAAACGGATTCAGAAGCGAAGTTATTGTTTTCTGATGAGCCAAATGTTTACTACTTGGCAAGAAAGACAGGGAAAATTCCCACTAGAGAGGGAAGGGGATATTGGTCGACTGGGACGGTGACATTTTTGATTCCTGATGGGGTCGCTCATTCGACAACGTATCGGCGATTTGATAATCCCACTGTAAAATCAGATCGTTTGGCATTCCGTTTAAAAAACAATGGGACTACAGATGCCTTTCCGATTATTACTGTAAAACACAATTCTGAGAATGGTTATCTTGCTGCAGTAAATGCTAAGGGTGCTACAGCTATTGGAAATAGAGAGGAAGCTGACACTGTATCTGTTAAGCAGTCTGAGATGCTACTGGACTTTAGAGATTCAAAAATTGGCAATGCTTTAACTTCTGGCACTCCTAACATTGGAATCATGAATGACCAAAACGCAAATCCTGTATTCAGCGGCAATATTCGTAAGGTTAATGTTTGGGGGCGTGACCATCTTGAATTAAACGGTCGTGGTTTTAGTTCTCTTACCTGGGATATTCCAAACGATAGTGCTGGTGGCGTTGGGTCTCTCAATGATTACTTGTGGTGGAGACAAATTTTTTGGCTCGGTGCTACAAATCAGTACGGAGCTATGAAAATTACGGTATCGGATAGCAACGGTCAATTTTTATACGGTGTAGAAACATTTAAGAGAAGCAATGGGCTTGATTGTGAATATAATTTTATGGCTACCGATGGAAAAGGTGGTTACAACATGATTAAGCAATGGCGATTTACAGGTACACATTGGGATTATCACAATCCTTTCAATGAATCTCGTGGCTGGTCTGATTTAAAGAGAAATGATGATAGGGTAACGATCTATTGGTTTGGCACCTACAATGAGTTCTACATTCCTGAGATTAAAGGGAAAAAGTCTAAGAAAATCCATATTGCTTTCTCATCAATTGGGAACCATCCGATTGTATCACACATGTATTTGGATAGTTTCTACTACCGCAAGGATCATGTTAGCATCGCTAAAGATATTCCAAATCGTTATCCAATTGGTTCTACGGTCGTTATTGATTGTGAGGATGACACTATAACTGTTGATGGCATGGATCGTTTTGGAGACCGCATTCAAGGGTCTTCGTGGTTGAAAATTCCGCCTGGAGAGAGTGAGTTAGAGATTTATTGTTCTAGCTGGATTAGGAATAAACCTACTGTGTCTATTCAATTTGAAGAGAGGTATCTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
5a41fca493de264c9298d90756bd124d4db09371049ac218fea13bcf6b238b0e
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,9070
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50