Protein

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Genbank accession
YP_006908098.1 [GenBank]
Protein name
PAAR motif of membran proteins
RBP type
TSP
Evidence DepoScope
Probability 0,95
Protein sequence
MPPVTRLGDIALGHSCYPPSPTIEASSNVFANSIAVHRLGDKIQPHACPDTPPHGRNSSSGSTSVFTNSKATCGIGDAVNCGGIIAQGSNNVFRG
Physico‐chemical
properties
protein length:95 AA
molecular weight: 9688,69960 Da
isoelectric point:7,73865
aromaticity:0,04211
hydropathy:-0,19684

Domains

Domains [InterPro]
cd14737
STR
2–95
cd14737
G3DSA:2.60.200.60
STR
3–94
G3DSA:2.60.200.60
IPR008727
STR
13–86
IPR008727
YP_006908098.1
1 95
Architecture
STR
STR 2-95
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_006908098.1
1 95
Domain Start End Length (AA) Confidence
N-terminal 1 57 57 0,1728
Central domain 58 84 28 0,0045
C-terminal 85 95 10 0,9782
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-57
Central
58-84
C-terminal
85-95

Taxonomy

  Name Taxonomy ID Lineage
Phage Campylobacter phage CP30A
[NCBI] 		1229752 Uroviricota > Caudoviricetes > Connertonviridae > Fletchervirus CP30A >
Host Campylobacter jejuni subsp. jejuni
[NCBI] 		32022 Bacteria > Proteobacteria > delta/epsilon subdivisions > Epsilonproteobacteria > Campylobacterales > Campylobacteraceae
Host Campylobacter jejuni subsp. jejuni PT14
[NCBI] 		1201032 Bacteria > Proteobacteria > delta/epsilon subdivisions > Epsilonproteobacteria > Campylobacterales > Campylobacteraceae

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_006908098.1 [NCBI]
Genbank nucleotide accession
NC_018861 [NCBI]
CDS location
range 27092 -> 27379
strand -
CDS
ATGCCACCAGTAACTAGATTAGGAGATATAGCATTAGGACATAGTTGTTATCCACCTTCTCCTACAATAGAAGCAAGTTCTAATGTTTTTGCAAATTCAATAGCTGTTCATAGATTAGGTGATAAAATACAACCACACGCATGTCCTGACACACCACCTCATGGTAGAAATAGTTCAAGTGGTAGCACAAGTGTTTTTACAAATTCAAAAGCTACTTGTGGTATAGGGGATGCTGTTAATTGTGGAGGTATAATCGCTCAGGGGAGTAATAATGTTTTTAGAGGATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
ab5364da38fcef16f0ccc2c4d953808eb407c397e92e27e7d02da53309fc69f5
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,9503
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Recombination and diversity amongst Campylobacter bacteriophage in chickens Connerton,I.F., Siringan,P. and Cummings,N.J. 2007-03-27 — GenBank