Protein

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Genbank accession
YP_009813541.1 [GenBank]
Protein name
virion structural protein
RBP type
TF
Evidence RBPdetect
Probability 0,87
Protein sequence
MSNTLRLEQIKTSGEQDGKEIVGGSELEFVDTDALANTQIADIKYDNTKGNLVIIKRSGKIITISGLPTVSLFGEGLPGGKGAPGKPGRNGRNGRDGNTGPRGNTGERGLKGKTGQAGNDGLDGPDGDDGYPGPRGNDGPQGPTGATGPTGPDGPAGEDGPSCISGATGPTGPAPTTTVVVSGGNAPPTNKTVFAWCFPIATTNPIPALPSVPSIGASVSNVDLVATRVVAGNDLFFAQAYLPVNVRGGTGNYSYKWTISDAKDLNIKGNTDRIVQIIFNGKVDQGKTLSLTATLTCVVMDMGQSSRPTATVRSTIRITARNPK
Physico‐chemical
properties
protein length:324 AA
molecular weight: 33086,54670 Da
isoelectric point:8,69003
aromaticity:0,04321
hydropathy:-0,40926

Domains

Domains [InterPro]
DC_0620
STR
2–322
DC_0620
PTHR24637
Unmapped
76–173
PTHR24637
IPR008160
STR
76–134
IPR008160
YP_009813541.1
1 324
Architecture
STR
STR 2-322 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Dickeya phage vB_DsoM_JA11
[NCBI] 		2382310 Uroviricota > Caudoviricetes > Salmondvirus >
Host Dickeya solani
[NCBI] 		1089444 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009813541.1 [NCBI]
Genbank nucleotide accession
NC_048077 [NCBI]
CDS location
range 64795 -> 65769
strand -
CDS
ATGAGTAACACTCTACGATTAGAACAGATCAAAACTTCCGGCGAGCAAGATGGCAAAGAAATTGTTGGCGGTAGTGAACTGGAATTCGTAGATACAGATGCACTCGCAAACACTCAGATCGCCGATATTAAATATGATAATACCAAAGGAAATTTGGTGATCATAAAACGCAGTGGGAAGATCATAACTATTTCAGGTCTTCCTACTGTTAGTTTATTTGGCGAAGGTTTACCGGGCGGAAAAGGTGCTCCGGGAAAACCGGGAAGAAACGGAAGAAACGGACGTGATGGAAATACTGGCCCGCGTGGAAATACTGGCGAGCGCGGTTTAAAAGGAAAAACAGGACAAGCAGGAAATGATGGATTAGATGGACCAGATGGCGATGATGGTTATCCCGGCCCTCGCGGAAATGATGGGCCGCAAGGACCAACTGGCGCAACTGGCCCAACTGGCCCTGATGGTCCAGCGGGAGAAGATGGACCAAGTTGTATTAGTGGCGCAACTGGCCCAACTGGCCCTGCACCAACTACAACTGTTGTTGTTAGTGGTGGAAATGCACCGCCAACAAATAAAACTGTTTTCGCATGGTGTTTTCCAATTGCAACAACAAATCCAATTCCTGCACTTCCTTCCGTTCCTTCTATTGGTGCTTCTGTATCTAATGTGGATCTCGTTGCAACCCGCGTGGTTGCTGGCAATGACTTGTTCTTCGCGCAGGCTTATCTGCCTGTAAACGTGCGTGGTGGCACCGGAAACTATTCGTATAAATGGACAATCAGTGACGCAAAAGATTTAAACATCAAAGGCAACACTGATAGGATTGTTCAGATTATTTTTAACGGAAAAGTTGATCAAGGAAAAACTTTATCTCTTACTGCAACGTTAACTTGCGTTGTTATGGATATGGGGCAAAGTTCACGTCCGACTGCAACTGTTCGTTCAACGATTCGAATCACTGCGCGAAATCCTAAGTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
db2aed0bab03e1613493ae0224550f8df797ed8d0d82c1f0bdf8246b88ca0e38
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6783
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Jumbo bacteriophages are represented within an increasing diversity of environmental viruses infecting the emerging phytopathogen, Dickeya solani Day,A.W., Ahn,J. and Salmond,G.P.C. 2018 — GenBank