Protein

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Genbank accession
YP_007877607.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,66
Protein sequence
MSNLTVGSLGGIPASLNQITVPAGHTLQIDGNVYHDGTGALRLPTGTTGQRPSSPNAGYIRYNTSDQCVEVYTGSSWLQYFGENGTSNAPFTSMANLSSNDPGSGYWYIRFDGSNTEEVYAYKDGNGKYWVMVASITDNTSHGSYTGGSDHWYGNWTTTSTTGNARAAMGSDFKSNHYRGWTANDVLIMQGFATSGTPYDTSTDVGYINGCFTSRGGNMYNMFRDYISLNNHSNIGGTQISGMQFLKGSASASDNRYRSSSRGELNPNNVWHVSPANCENYTFSMINGLGCSSNGCNVEHHAWVGQTGNNYSNQNFPEPNWSGSWGINNPGSQNHMYWLFFYA
Physico‐chemical
properties
protein length:343 AA
molecular weight: 37353,00640 Da
isoelectric point:5,73542
aromaticity:0,13120
hydropathy:-0,61545

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_007877607.1
1 343
Domain Start End Length (AA) Confidence
N-terminal 1 183 183 0,0088
Central domain 184 332 150 0,0571
C-terminal 333 343 10 0,9713
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-183
Central
184-332
C-terminal
333-343

Taxonomy

  Name Taxonomy ID Lineage
Phage Cyanophage P-RSM1
[NCBI] 		536444 Uroviricota > Caudoviricetes > Pantevenvirales > Emcearvirus > Emcearvirus gerard
Host Prochlorococcus marinus str. MIT 9303
[NCBI] 		59922 Bacteria > Cyanobacteria > Prochlorales > Prochlorococcaceae > Prochlorococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_007877607.1 [NCBI]
Genbank nucleotide accession
NC_021071 [NCBI]
CDS location
range 28931 -> 29962
strand -
CDS
ATGAGCAATCTAACTGTCGGTAGTCTAGGTGGCATACCTGCATCACTGAATCAAATAACTGTTCCTGCAGGTCATACATTACAGATTGACGGTAATGTATATCATGATGGTACTGGTGCTTTGCGTCTACCTACAGGTACAACTGGACAAAGACCGAGTAGTCCAAATGCAGGATATATCAGATATAATACGAGTGATCAGTGTGTAGAGGTTTATACTGGTAGTTCTTGGTTACAATATTTTGGAGAGAATGGTACATCTAATGCACCATTTACTTCGATGGCAAACTTATCAAGTAATGACCCTGGATCTGGATATTGGTATATTAGGTTTGATGGTTCAAACACTGAAGAAGTTTACGCATATAAAGATGGTAATGGTAAGTATTGGGTGATGGTTGCATCTATCACAGATAATACTTCACATGGTAGTTACACAGGTGGTTCGGATCACTGGTATGGTAACTGGACAACTACATCAACTACTGGTAATGCAAGAGCAGCAATGGGATCTGACTTTAAGTCAAACCATTATAGAGGATGGACAGCAAATGATGTGTTGATTATGCAAGGGTTTGCTACATCTGGTACACCTTATGATACATCAACAGATGTTGGATACATTAATGGTTGCTTTACCTCTAGAGGTGGTAACATGTATAATATGTTCCGTGACTACATCTCTCTGAACAACCATAGTAACATCGGTGGTACACAGATTAGCGGGATGCAGTTTTTGAAAGGATCAGCATCAGCATCAGACAATAGATATAGATCTAGTAGTAGAGGTGAACTTAATCCAAATAATGTTTGGCATGTTTCACCTGCAAACTGTGAAAACTATACTTTTAGTATGATTAACGGACTTGGTTGTTCATCAAATGGATGTAACGTTGAACACCATGCATGGGTAGGACAGACTGGTAATAACTATTCAAATCAAAACTTCCCAGAACCTAACTGGTCTGGTAGTTGGGGGATAAATAATCCTGGCTCCCAGAATCATATGTACTGGTTATTCTTCTACGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
79b5b557b4f86e78a5285deb91858fffb6950b80278b1e36768a57213a3557a4
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5391
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Cyanophage P-RSM1 Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank