Protein

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Genbank accession
YP_009876250.1 [GenBank]
Protein name
tail protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,93
Protein sequence
MKKVTSSRAYDCLVQKYIGSAYDKVKDVSDNLEKVSSVADNLTQVNLLIPELDNIKACAENIDEIKNAPIAAENANNSAILANDVLEQIKDIVSDLEAVPLGNGSWQAGQTFTAYNQFMVYNGIAYKPLTTTTLPYEPTGATPDLAFVGPFDANDHSKLNNRDEAGAHPASAIDGAMWHVGTVKDLQGLVGVGGIQVSVASYHDLDYLSGGGTFVWGTGRHNGGTFIDPNRPFPTDWNDQGQLKTWFAESSSDVGGWSRTYENDINVSYFGYLKDSNNNETFKAVANHVELSKERVSGYEKDTTFVVSTSQISTIQKAANLFPRYLDFKFSIEIEPGDYSAEDVKVPSTSRATNQNLHEPCSATIKSATGNPDDVLVGSIFFVNAGGSNTQDITIDHTTPLYSGESGGLAYWFCSGEVSCSNIKYSAGFVGAGILAYGSKVEARTIDVTNLDVLVRAKRGAEVHIRFCTGDFTGDRVIVSYEGSGVVSGNHTFTKSSGVWADVDGTSTVINRDTGEYSYSVYNQIPLLRDNNLLLKRTTNFGSTKTLLDGVKPLNTDSVFTQLGDYCFVSGSNGKNLTLDRNNYQSADNHRRYKSDGTASGLSLSADGNIYFHFYAAGTEDDVVTRASAKSIFMNAGGLRNDSDNVPWINGSSSGKFVLTPSGTFGASSDSNAIQLLNRTGTDGAVTSFYKNGSAVGGISVSSNATVYNTSSDYRLKTNIRECDNALSIVKNLNPVTFDWIRDGSTTTGFLAHELAEQIPEAVTGTKDELNQDGEPVYQAVDHSKIVPYLTKVIQDLMDRVEQLERIK
Physico‐chemical
properties
protein length:808 AA
molecular weight: 87402,38760 Da
isoelectric point:4,88607
aromaticity:0,09282
hydropathy:-0,34183

Domains

Domains [InterPro]
DC_1559
ATT
25–178
DC_1559 DC_0421
IPR030392
CHP
712–764
IPR030392
IPR030392
CHP
712–808
IPR030392
YP_009876250.1
1 808
Architecture
ATT
STR
ATT 25-178 | STR 275-808
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009876250.1
1 808
Domain Start End Length (AA) Confidence
N-terminal 1 314 314 0,9946
Central domain 315 513 200 0,9679
C-terminal 514 808 294 0,8582
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-314
Central
315-513
C-terminal
514-808

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage JSF3
[NCBI] 		1916111 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio cholerae
[NCBI] 		666 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009876250.1 [NCBI]
Genbank nucleotide accession
NC_049380 [NCBI]
CDS location
range 8854 -> 11280
strand +
CDS
ATGAAAAAAGTAACTAGCAGTAGGGCTTATGATTGCTTAGTTCAGAAATATATTGGGTCAGCTTACGATAAAGTTAAAGACGTGTCTGACAACTTAGAAAAAGTGTCTTCCGTAGCTGATAACTTAACTCAGGTAAATTTACTTATACCAGAATTAGATAATATTAAAGCATGTGCAGAAAATATAGATGAAATTAAAAATGCCCCTATTGCGGCGGAGAATGCAAATAATAGTGCGATTTTAGCTAATGATGTTTTAGAACAAATTAAAGATATTGTGAGTGATTTAGAAGCAGTTCCACTTGGGAATGGTTCTTGGCAAGCTGGACAGACGTTCACCGCGTACAATCAGTTTATGGTGTATAACGGCATAGCGTACAAACCCCTAACGACCACGACGTTGCCCTACGAACCTACTGGAGCTACGCCCGATTTAGCCTTTGTTGGGCCGTTTGATGCAAACGACCACTCGAAGTTGAATAATCGTGATGAGGCAGGGGCACATCCTGCTAGTGCTATTGATGGAGCAATGTGGCACGTTGGTACGGTTAAGGACTTGCAAGGATTAGTAGGTGTGGGAGGTATTCAGGTTAGTGTTGCTTCTTACCACGATCTTGATTACTTATCGGGTGGGGGTACGTTTGTATGGGGTACTGGTCGTCACAATGGTGGAACTTTTATTGACCCCAACAGACCTTTTCCGACTGATTGGAATGATCAAGGTCAGCTTAAGACTTGGTTTGCTGAATCGAGTAGTGACGTGGGCGGGTGGAGTCGTACCTATGAAAATGATATTAACGTAAGTTATTTCGGATATTTAAAAGACTCCAACAACAATGAAACTTTTAAAGCAGTGGCTAATCATGTGGAACTAAGCAAAGAGCGCGTAAGCGGTTATGAAAAAGACACGACTTTCGTTGTGTCTACATCGCAGATTTCCACGATACAAAAAGCAGCAAATCTATTTCCACGTTACCTTGATTTCAAATTTTCGATTGAAATTGAACCGGGGGACTACTCGGCTGAAGATGTTAAAGTGCCATCAACTAGCAGAGCAACTAACCAAAATTTACATGAACCATGCAGCGCAACAATAAAAAGTGCAACAGGAAATCCCGATGATGTATTGGTAGGGTCTATTTTCTTTGTAAACGCTGGGGGTTCAAACACCCAAGATATTACGATAGATCATACCACCCCGCTGTACAGCGGTGAATCTGGTGGTTTGGCATACTGGTTTTGTAGTGGGGAAGTCAGTTGCAGTAACATTAAATACAGCGCTGGATTTGTTGGCGCCGGGATCTTGGCATACGGATCTAAAGTTGAAGCACGAACTATAGATGTAACAAACTTAGACGTTTTGGTGAGAGCAAAGCGTGGTGCAGAGGTTCATATTAGATTTTGCACTGGCGATTTCACTGGTGATCGAGTCATTGTGTCATACGAAGGTTCTGGTGTAGTTTCAGGAAATCATACTTTTACTAAGTCCAGTGGTGTATGGGCCGATGTTGACGGAACATCAACAGTAATAAACAGAGATACAGGAGAGTATTCTTACTCTGTTTATAACCAAATTCCTTTACTCAGAGACAATAACCTACTGCTGAAGCGAACTACTAATTTTGGTAGCACAAAAACTTTATTGGATGGAGTTAAACCCCTCAATACCGACTCCGTGTTCACACAGTTGGGTGATTATTGTTTTGTATCGGGTAGTAACGGCAAGAATTTGACACTGGACAGGAATAACTATCAGTCTGCTGATAACCATCGTCGGTATAAATCTGACGGCACGGCTAGTGGTCTAAGTTTAAGTGCAGATGGTAACATTTACTTTCATTTTTACGCCGCTGGGACGGAAGATGACGTTGTAACTCGAGCGTCTGCCAAGTCTATCTTTATGAATGCAGGGGGGTTAAGGAATGATTCAGACAATGTACCTTGGATCAACGGATCAAGCTCTGGGAAGTTTGTTTTAACTCCATCTGGAACTTTTGGGGCATCATCTGACAGCAACGCAATTCAATTACTAAACAGAACAGGAACTGACGGCGCAGTTACGTCTTTTTATAAAAATGGGTCGGCGGTAGGTGGTATCTCGGTTTCCTCTAATGCAACAGTATACAATACAAGTTCTGACTATAGACTAAAAACAAACATTCGAGAGTGCGATAATGCGTTAAGCATTGTAAAAAATCTTAACCCTGTTACTTTTGATTGGATTAGAGACGGGTCTACTACAACAGGGTTTTTAGCGCACGAATTGGCTGAGCAAATTCCAGAGGCGGTAACAGGAACTAAAGATGAGCTAAATCAAGATGGAGAGCCTGTTTATCAAGCTGTAGATCACTCTAAAATCGTACCTTATTTAACTAAGGTTATACAGGATTTGATGGACAGAGTGGAGCAGTTAGAAAGGATTAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
72d2a30895142b1111af140257415b7786c0d7ef5ffbc98ea8b1481f109b9b4f
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6267
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50