Protein

View in Explore
Genbank accession
ADO97642.1 [GenBank]
Protein name
fiber
RBP type
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,81
TSP
Evidence RBPdetect2
Probability 0,68
TF
Evidence UniProt/TrEMBL
Probability 1,00
Protein sequence
MSLTRLKNIITSRTGRIIYVNPDDFDASDAIDNRGNSSLRPFKSLQRAFLEVARFSYRVGLSNDEFDAFSIYLYPSEYVIDNRPGDVLYTNVAPLDANSNFDVTSPNNVLYKYNSVEGGVIVPRGCSIVGSDLRRTKIIPKYIPYPTIYAAKNINTEDQVPPPVNIFSVTGGCYFWQFSFFDGDDTGVYFRPDSTETIPPSYSHHKVTAFGFADGLNSLSKLIEDGRVPNSDYSAVANILDRTDLDIYYQKVSKAFATIPDTSGDPETDQIQARVEENRIVGPISDEYRISQITRNGQTATAVTVDEFGNPRNHGFSVGVNVNISGVTSSTGTSGEVDASLYNGSFQVTSASGNVFTYQMIQEPTGTAIGSNIVVKVEIDTVDSASPYMFNLSLRSVWGMNGMHADGAKATGFKSMVVAQFTGLSLQKDDRAFVRYDESTGNYLAATSGDGAHLDGFARYRKGWIHTHVMASNDAFCQVVSVFAVGYGDHFAGFRGADMSITNSNSNFGSTALRSKGFKLKSFTKDKSGQLTHIVPPKSLADVEEVSVNWVNIDITRTRQVNGQLNNIGQTAGSRLYLYGYTALDAAPPTRIQGYAVGARQDGTGAAAVADKVKCLLFADNSATTASVRSAAISPFGPTVSTSTAGEVGSPFQYDEGTYGGAFGQTGTDANGNPIYNPAGWYISTNPTDNQIYASIQTGRTKYDSVNFTPTTFISRVPDARNLVDRTYRVRMVIPQDQQLPLPRSPISGFVLQPLNTDTTRYELTQTFYLYDIETVTKFERGVNDGVYYLTLLWASVIPGEAGSPVGNYDDKRFSQNVNEVYPSFDRDNPVADPEAAVSVADKRIIGLVYSTNGSTPAINNKDPQRSITKEATLKLVADSGWSQPGTTPNWDAANVQLSGIPLTARLGDAETRKIPIRVDGEGNLAPIPVELRRHSILRSGNHTFEYTGFGPGNYSTAFPQTQVETLTDDQIKFSQSIKEDAGVAFYSGLNSNGDLFIGNQVINPVTGQITNEDIAQLNVVGEENTTIQTFSELVLTDKLTVIGGGSNALESVFSGPVTFQNTLSSTGNILARKLTYNNQDGTILKQTLLAPKDANGLPDFSAFSPGTYDTPDDGDIIYNENWELGDSLGWIRWQQNWYEFGLTNTGAIDLTAGGNVGLGRTAASNDANNRLEVQGNTYIDGDLTVTGRGAVSPAKYITRSTVLTVAQSTFAITGYSSLTHTASSVLVYINGVAQIGGVNFNVDSNGTNVVFDTGTIPQAGDTVHIVELPI
Physico‐chemical
properties
protein length:1271 AA
molecular weight: 137533,58780 Da
isoelectric point:4,86220
aromaticity:0,09835
hydropathy:-0,28206

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
ADO97642.1
1 1271
Domain Start End Length (AA) Confidence
N-terminal 1 86 86 0,9667
Central domain 87 306 221 0,9202
C-terminal 307 1271 964 0,0380
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-86
Central
87-306
C-terminal
307-1271

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-ShM2
[NCBI] 		445683 Uroviricota > Caudoviricetes > Pantevenvirales > Ahtivirus > Ahtivirus sagseatwo
Host Synechococcus sp. WH 8102
[NCBI] 		84588 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ADO97642.1 [NCBI]
Genbank nucleotide accession
GU071096 [NCBI]
CDS location
range 24980 -> 28795
strand +
CDS
ATGTCACTAACAAGACTCAAGAATATTATCACGTCCCGTACGGGACGTATTATCTACGTCAACCCCGATGATTTCGATGCTTCGGATGCGATTGACAACAGAGGCAACTCTTCATTGAGACCTTTCAAGAGTCTGCAGCGTGCATTTCTTGAGGTGGCACGTTTCTCATATCGTGTTGGTCTATCGAACGACGAATTTGACGCATTTTCGATCTATCTCTATCCTTCTGAGTATGTTATCGATAACAGACCTGGTGATGTTCTTTATACTAATGTAGCGCCACTTGACGCTAACTCTAACTTTGATGTTACCTCACCTAATAATGTACTGTATAAGTACAACTCTGTTGAGGGTGGTGTTATTGTTCCTAGAGGTTGTTCCATTGTTGGTTCTGACCTTCGTCGTACTAAGATTATTCCTAAGTACATTCCTTATCCTACTATCTACGCTGCAAAGAATATCAATACTGAGGACCAGGTTCCTCCTCCCGTAAATATCTTTAGCGTAACTGGTGGTTGCTATTTTTGGCAGTTCTCATTCTTCGATGGTGATGACACTGGTGTATATTTTAGACCAGACTCTACTGAAACTATTCCTCCATCGTATTCACACCATAAAGTAACAGCATTTGGTTTTGCTGATGGTCTAAACAGTCTTTCCAAGTTGATTGAAGACGGCAGAGTTCCTAACAGTGATTACTCTGCTGTTGCTAATATCCTTGACAGAACTGACCTCGATATCTACTATCAGAAAGTATCGAAAGCATTTGCTACAATTCCTGATACTTCTGGAGATCCCGAGACTGACCAGATTCAGGCAAGGGTTGAGGAAAACAGGATCGTTGGTCCTATTTCTGATGAATATCGTATTTCTCAAATTACTCGTAACGGTCAAACTGCTACAGCGGTTACTGTTGATGAGTTTGGTAACCCACGAAACCATGGTTTCTCTGTTGGTGTGAACGTCAACATCAGTGGTGTTACATCATCTACTGGTACATCTGGTGAAGTGGATGCATCATTGTATAATGGTTCGTTCCAAGTTACATCTGCATCAGGTAATGTCTTTACTTACCAGATGATTCAGGAACCAACTGGTACTGCAATTGGTTCAAACATTGTGGTCAAAGTTGAGATTGATACAGTTGACTCTGCATCACCATACATGTTCAACCTATCCTTGAGATCGGTTTGGGGCATGAATGGAATGCACGCTGATGGTGCGAAAGCAACTGGTTTCAAATCAATGGTTGTGGCTCAATTCACGGGATTGAGTCTTCAGAAAGATGATAGAGCATTCGTACGATATGATGAATCTACAGGTAACTATCTTGCAGCAACATCTGGAGATGGTGCTCACTTAGATGGTTTCGCACGTTATAGAAAGGGGTGGATACACACCCACGTCATGGCTTCTAACGACGCATTTTGTCAGGTCGTTTCTGTGTTTGCTGTGGGTTACGGCGATCACTTCGCTGGTTTCCGTGGCGCTGACATGTCGATCACGAACTCAAACTCTAACTTTGGATCAACAGCTCTTAGATCTAAAGGTTTCAAACTAAAATCATTTACTAAAGATAAGTCTGGACAACTTACGCACATCGTTCCACCTAAGTCTCTTGCAGACGTGGAAGAAGTATCAGTCAACTGGGTAAACATTGACATCACTCGTACTAGACAAGTGAATGGACAGTTGAATAACATTGGTCAGACTGCTGGTAGTAGATTATATCTTTATGGTTATACTGCATTAGATGCTGCTCCTCCGACTCGCATTCAAGGTTATGCGGTAGGTGCCAGACAAGATGGCACTGGTGCTGCAGCAGTTGCAGATAAAGTAAAATGTCTCCTGTTTGCTGATAACAGTGCAACCACTGCATCAGTAAGATCTGCAGCAATCTCACCATTCGGTCCTACTGTTTCTACTTCTACTGCTGGTGAAGTAGGATCTCCATTCCAATACGATGAAGGCACCTATGGTGGTGCATTTGGACAAACTGGTACGGATGCAAATGGCAATCCAATCTACAATCCTGCTGGTTGGTATATTTCTACAAATCCAACTGATAACCAGATCTATGCTTCTATCCAGACGGGTAGAACTAAGTACGATAGTGTAAACTTCACACCAACTACGTTCATCTCTCGTGTCCCTGACGCAAGAAACCTGGTTGACAGAACGTATCGTGTACGAATGGTGATCCCACAAGATCAGCAGTTGCCATTGCCACGTTCACCTATCTCAGGTTTTGTTCTACAACCATTGAACACAGATACCACAAGATACGAACTTACGCAAACATTCTATCTGTATGATATTGAAACTGTTACTAAGTTTGAAAGAGGTGTCAACGATGGTGTTTACTATTTGACACTTCTATGGGCATCTGTTATTCCTGGTGAAGCAGGATCTCCTGTTGGTAACTACGATGATAAGAGATTCTCTCAGAATGTCAATGAAGTTTATCCATCATTCGATAGAGACAACCCTGTAGCAGATCCCGAAGCAGCAGTTTCTGTTGCTGATAAGAGAATCATCGGTTTGGTATATTCTACCAATGGTTCTACACCTGCTATCAATAACAAAGATCCTCAGCGTTCTATCACTAAGGAAGCAACACTGAAATTGGTTGCTGATAGTGGTTGGTCACAACCTGGTACTACACCTAACTGGGATGCAGCAAACGTTCAGTTGTCGGGTATTCCACTGACTGCACGCTTAGGTGATGCTGAAACTCGTAAGATTCCTATTCGTGTTGATGGCGAAGGTAACCTTGCACCAATTCCTGTAGAACTGAGAAGACACTCTATTCTACGTTCTGGTAACCACACCTTTGAATATACTGGTTTCGGTCCTGGTAACTACTCCACAGCATTCCCACAGACACAGGTTGAGACACTTACTGATGATCAGATCAAGTTCTCTCAGTCAATCAAGGAAGATGCAGGTGTTGCATTCTACTCAGGTCTAAACTCTAACGGTGACCTATTCATTGGTAACCAGGTTATCAACCCAGTTACGGGTCAGATTACTAACGAAGATATTGCACAATTGAATGTTGTTGGTGAAGAAAACACAACTATTCAAACGTTCTCTGAGTTGGTTCTTACTGATAAACTAACTGTTATCGGTGGTGGTTCCAACGCACTGGAATCAGTATTCTCTGGTCCAGTCACATTCCAGAACACTTTGTCATCTACGGGTAACATACTTGCACGTAAACTGACATACAACAACCAGGATGGTACAATCCTGAAGCAGACGCTGTTAGCACCAAAAGATGCTAACGGTTTACCTGACTTCTCTGCATTTAGTCCTGGAACATATGATACGCCAGATGATGGTGATATCATTTATAATGAAAACTGGGAACTTGGCGATTCACTTGGTTGGATTCGTTGGCAGCAAAACTGGTATGAGTTTGGACTAACTAATACTGGTGCAATCGATCTGACTGCTGGTGGTAACGTTGGTCTTGGTAGAACTGCAGCATCTAACGATGCTAATAACAGACTTGAGGTGCAGGGTAACACCTACATCGATGGTGATCTTACTGTTACTGGCCGCGGCGCAGTTTCTCCTGCTAAGTATATTACCAGATCTACAGTTCTAACGGTAGCACAGAGTACATTTGCAATTACTGGTTATAGCAGTCTTACTCATACTGCAAGTTCAGTTCTTGTATACATCAATGGTGTTGCACAAATTGGCGGTGTCAACTTCAACGTTGATAGTAATGGCACCAACGTTGTGTTTGATACAGGCACAATTCCACAGGCAGGGGATACAGTTCATATTGTTGAGCTGCCTATCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
3f3cf631c906b9816db717700750e2adc0033b0f866462228caab9ca963769d3
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,3355
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Cyanophage 8102-4 Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Erlich,R., Young,S.K., Koehrsen,M., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Borenstein,D., Chen,Z., Engels,R., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heiman,D., Hepburn,T., Howarth,C., Jen,D., Larson,L., Lewis,B., Mehta,T., Park,D., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., Walk,T., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C., Galagan,J. and Birren,B. 2011-09-23 — GenBank