Protein

View in Explore
Genbank accession
QGZ13365.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence RBPdetect2
Probability 0,51
Protein sequence
MADMAVELLAMADMAVELLAMADMAVELLAMADMAVELLAMADMAVELEITIFKNPELFIIVFTAICELATAFIAICELATAFIAICELATAFIAICELATAFIAICELATAFIAICELATAFIAICELATAFIAICELATAFIAICELATAFIAICELATAFMYLSLLANASEVLIFILSIPASFAAVFAIAKSISLIELKATSSLDKAVITLKLFSMH
Physico‐chemical
properties
protein length:220 AA
molecular weight: 23280,96490 Da
isoelectric point:4,05003
aromaticity:0,08182
hydropathy:1,54045

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QGZ13365.1
1 220
Domain Start End Length (AA) Confidence
N-terminal 1 47 47 0,9833
Central domain 48 209 163 0,6216
C-terminal 210 220 10 0,9875
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-47
Central
48-209
C-terminal
210-220

Taxonomy

  Name Taxonomy ID Lineage
Phage Clostridium phage phiCDKH01
[NCBI] 		2686203 No lineage information
Host Clostridioides difficile
[NCBI] 		1496 cellular organisms > Bacteria > Bacillati > Bacillota > Clostridia > Peptostreptococcales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QGZ13365.1 [NCBI]
Genbank nucleotide accession
MN718463 [NCBI]
CDS location
range 44414 -> 45076
strand -
CDS
ATGGCAGACATGGCTGTCGAGCTACTTGCGATGGCAGACATGGCTGTCGAGCTACTTGCGATGGCAGACATGGCTGTCGAGCTACTTGCGATGGCAGACATGGCTGTCGAGCTACTTGCGATGGCAGACATGGCTGTCGAGCTAGAGATTACTATATTTAAGAATCCCGAATTATTTATTATTGTGTTTACTGCTATTTGTGAGCTTGCCACAGCATTCATTGCTATTTGTGAGCTTGCCACAGCATTCATTGCTATTTGTGAGCTTGCCACAGCATTCATTGCTATTTGTGAGCTTGCCACAGCATTCATTGCTATTTGTGAGCTTGCCACAGCATTCATTGCTATTTGTGAGCTTGCCACAGCATTCATTGCTATTTGTGAGCTTGCCACAGCATTCATTGCTATTTGTGAGCTTGCCACAGCATTCATTGCTATTTGTGAGCTTGCCACAGCATTCATTGCTATTTGTGAGCTTGCCACAGCATTCATGTATTTATCACTTCTAGCTAACGCATCCGAAGTGTTGATATTTATATTGTCTATCCCCGCTAGCTTCGCTGCGGTTTTTGCTATAGCTAAATCAATTTCCTTGATAGAATTGAAAGCTACTTCGTCACTTGATAAAGCTGTTATAACACTTAAATTATTTTCTATGCATTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
aa1b26c6e08e89283c3e1645d7a2b7aa94657ab02104117ed04cfc703f9d0a6f
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,4292
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation of a new Clostridioides difficile Siphoviride bacteriophage from clinical strains Hinc,K., Iwanicki,A., Obuchowski,M., Martirosjan,G. and Kabala,M. 2021-02-22 — GenBank