Protein
View in Explore- Genbank accession
- AQT28064.1 [GenBank]
- Protein name
- putative membrane protein
- RBP type
-
TSP
- Protein sequence
-
MVKGEQHKLEDYPNKWGCIIPLFAPFYRKDLTLRHVEEDRTLHEGIDYYLGHYYKAASEENKMPIFGSVMIIDQTLSGTIEFVQYRTLGGRYNMLKRVIDVHLNQVDLRDPRNLDWEDVMRYEMAIPSVDAPANIDEAIANDLPTGALDRVRKALERLNEAQKQGYDDVIAALIALTNKIHAHDVDNHEDKRGRHRITAAQLNALHRDDTAVDSLKAYGYVLADLVTLVNLLGENAEDTDNLFRLIGDTLEGRLRFDGSNVIIQNEGGSALINLVNGDLNILSNSNIVLEADASGGNDKITASLRSGDNLLTVHSDAGNDDTAVYNGFYLIHVGNLADFMPPPDYVDTILHVETTETVYLAGRGLSGSPLTGYVFYPVATSTTNGVFRLNHSIYSDSKDMAASGRALYNLNRLASEKVDNTFTINGHRLNQDITITKTDLGLGNVNDTAPENKPASNAFKSAAAAKANAAHSHPNSDFTNIPYADHDTYGMTKLTTTQSSRDDVAATPVMLNDAYQSQLVAESNLSGKMPSLPFDIMQYGGFGYLPLPVLGSYGAAGTGSGVAVGCIEADGRLVLLRNGADHANKGVYYWYGEFKTDGTFSKTVTTTTEYRPNFIEDGDRVSHTHRGSETVFPLSTINGKYYLVLTRSTMDMSKHVGAEIVDLNGCPLGNGCSIFLYKNEVHFHFHYFGNGGCYSRHWKAKISDIEAGRPITLERVGLNGDDWKGNAQNDTETFFFTTLGQANNLDGDKPIIHRLDNGHWSGSNNVRHSTQNSMFYIKDNKLRVQVYGRTYYSRSDGSTGYPLSHSFVLDLDTMQMVSDNADCFPIKLYNNRWEMPAGKSAPAEAWTGANPNNNTPVLVTRDRMFAFRFYGTTYIPRVYEFKSGTDLSVFDYLEAGKSNPVTITAADFEGAYGSVVGAGTKYMGFLPGNKLISDQLDGRDTICTYDLNGSYVEDGTGWGPTSDRRLLPNGDNARLIRVPMNWDTNKNEGFVISSTYPTNNSKIVNETPTSPVSWSSALVADLRTRFRALHPATGGMSLWEDRVMLHAFGDWEKGANTLVCFIQYTYVFWADAAKSSRRVFTATHKCTITMAGAAVASVNIGELISNPNWNNSVVGWGSFESFGMNTCGTTDDGHKVYCLNHSLYVSYVGHSGGRIFQIVLDKDDGSVLYERNRNAHTHVMYASYWHPDIGLIDTVNEYAAQVVSAKKLGRTVAEMSGNTYLSSQIIHATQVASGWVVYFTEAARFYVAGESLELPIQNFDLSKMSEFPNYQNKTFYIYVEVTYDNEGVGTANYKFSLTKTADSETSMYIGYAITGDTQINELKVDRATRLGMIYELEEHIYDRRAHNDITNLDKNSFSLGKVENMGMIHTLTLPTFKEVFNSWERISHFKDSATQPHNPGELSSWTYTEATDTIKCTINSATFVGFVSPAPVGDYVFDTLVGSPDGDNDAVAVILAFIEDAQGIEHTICAVRAQSIEGHMAISGKFDIWYDYHLPSRKLIKTGGGTGANAGGWGGNYSRITAVRKGEKFVVSATRFIKSTKLEDHGKEHIEVVHEFDLQQFTELQQFKSGGRFGYGCMSQPNSTFINILRPDENVGNYYASADTIRILSERQAEAVAFATGTIGGGHTLPIPIGFTAADCHAVVSFNHSSSTSKLTYAKAVLSGLTCNITIRLAGGSVVTNPLGCNARYYLIARKNPEV
- Physico‐chemical
properties -
protein length: 1699 AA molecular weight: 187481,21200 Da isoelectric point: 5,60924 aromaticity: 0,10241 hydropathy: -0,32278
Domains
Domains [InterPro]
No domain annotations available.
Legend:
ATT
STR
RBD
CBM
LEC
ENZ
CHP
LNK
TAS
TTP
UNK
Unmapped
Tail Spike Domain Segmentation
Tail Spike Domain Segmentation
This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.
Domain Layout
1
1699
| Domain | Start | End | Length (AA) | Confidence |
|---|---|---|---|---|
| N-terminal | 1 | 505 | 505 | 0,7161 |
| Central domain | 506 | 704 | 200 | 0,6373 |
| C-terminal | 705 | 1699 | 994 | 0,5165 |
Note: Constraints were applied during segmentation.
Fixed 137 C-terminal predictions appearing before Central domain
Fixed 137 C-terminal predictions appearing before Central domain
Legend:
N-terminal
Central domain
C-terminal
3D Structure with Domain Coloring
The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).
Domain Coloring
N-terminal
1-505
1-505
Central
506-704
506-704
C-terminal
705-1699
705-1699
Taxonomy
| Name | Taxonomy ID | Lineage | |
|---|---|---|---|
| Phage |
Vibrio phage pVa-21 [NCBI] |
1958921 | No lineage information |
| Host |
Vibrio alginolyticus [NCBI] |
663 | cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales |
Coding sequence (CDS)
Coding sequence (CDS)
Genbank protein accession
AQT28064.1
[NCBI]
Genbank nucleotide accession
KY499642
[NCBI]
CDS location
range 96439 -> 101538
strand -
strand -
CDS
TTGGTCAAAGGGGAACAGCACAAGCTTGAGGACTACCCTAATAAATGGGGATGTATCATTCCTCTGTTTGCGCCGTTCTATCGCAAAGATCTCACACTACGTCACGTAGAGGAAGATCGCACCCTTCACGAGGGTATTGACTACTACCTCGGTCACTATTACAAAGCAGCATCTGAAGAAAACAAGATGCCGATTTTTGGTAGTGTGATGATAATCGATCAAACGTTATCTGGCACTATTGAATTTGTACAGTACCGAACTCTCGGTGGTCGCTACAACATGCTTAAGCGTGTTATTGATGTCCATCTTAACCAAGTTGATTTGCGTGACCCACGTAACTTAGACTGGGAAGATGTGATGCGTTACGAGATGGCTATCCCATCCGTAGATGCGCCTGCAAACATCGATGAAGCGATTGCTAACGATTTACCTACTGGTGCCCTAGACCGCGTAAGAAAGGCTCTAGAGCGTCTTAACGAAGCTCAGAAGCAGGGGTATGATGATGTCATCGCCGCACTGATTGCTTTAACCAACAAAATCCATGCACATGACGTGGATAACCACGAAGATAAACGTGGTCGTCACCGCATTACAGCGGCGCAGCTCAACGCGCTACATCGTGATGATACCGCAGTAGACTCATTGAAAGCGTATGGTTACGTCCTAGCCGATTTGGTTACGTTGGTTAACCTACTGGGTGAAAATGCCGAAGACACAGATAACCTGTTCCGTCTAATCGGCGACACACTGGAAGGTCGTTTACGTTTCGATGGTTCAAACGTCATCATTCAAAACGAAGGTGGTTCAGCACTGATTAACCTTGTTAATGGTGACTTGAACATCCTCTCTAACAGTAACATTGTGTTAGAAGCAGATGCAAGTGGTGGTAATGATAAAATCACTGCATCACTCCGTTCGGGAGATAACCTGTTAACAGTACACTCGGATGCAGGTAATGACGACACAGCGGTGTATAACGGCTTCTACCTCATCCATGTCGGCAACCTTGCTGATTTCATGCCGCCGCCTGATTATGTCGATACAATTCTGCATGTAGAGACGACTGAAACTGTTTATCTAGCTGGTCGTGGTCTTAGTGGTTCGCCACTAACTGGTTACGTGTTCTACCCTGTAGCAACATCAACCACTAACGGTGTGTTCCGTCTTAATCATTCGATTTACTCGGATAGTAAAGACATGGCAGCATCAGGACGTGCATTGTACAACCTGAATAGGCTAGCCTCTGAAAAGGTAGACAACACATTCACCATTAATGGTCATCGTCTAAACCAAGACATTACCATTACTAAAACAGACTTAGGTCTGGGTAATGTGAACGACACTGCTCCGGAAAACAAGCCTGCGAGTAATGCGTTTAAATCAGCAGCAGCGGCAAAAGCAAATGCTGCGCACTCACACCCTAACTCGGACTTCACGAACATCCCTTATGCTGACCATGATACATACGGTATGACTAAGCTAACGACTACACAGTCGTCTCGTGACGATGTTGCAGCTACTCCAGTAATGCTGAATGATGCATACCAGAGCCAGTTGGTTGCAGAGAGTAACCTGAGTGGTAAGATGCCGTCGCTGCCATTTGACATTATGCAATATGGTGGATTTGGTTATCTACCGTTGCCAGTGTTGGGTTCATATGGTGCTGCTGGTACAGGTTCTGGTGTGGCAGTGGGCTGTATTGAAGCAGATGGGCGTTTGGTACTATTGCGTAACGGTGCTGACCATGCTAATAAAGGTGTATATTACTGGTACGGTGAGTTTAAAACGGATGGAACGTTCTCTAAAACAGTAACGACTACAACTGAATACCGCCCAAACTTTATTGAAGATGGCGACCGTGTAAGTCATACGCACCGTGGTAGTGAGACAGTATTTCCATTGTCTACAATTAATGGCAAGTACTACCTAGTACTGACCCGTAGTACTATGGATATGTCTAAACACGTAGGTGCTGAAATTGTTGACTTAAATGGCTGTCCATTGGGTAACGGTTGTTCTATCTTCTTGTACAAGAATGAAGTTCACTTCCACTTTCATTACTTTGGTAACGGTGGTTGTTATAGTCGTCACTGGAAAGCTAAGATTTCAGATATCGAAGCGGGTCGACCGATCACGTTAGAACGTGTTGGTCTAAACGGTGATGACTGGAAGGGTAATGCTCAGAACGACACCGAAACGTTCTTCTTTACTACCCTCGGCCAGGCAAATAACTTGGATGGTGATAAGCCAATCATCCATCGTCTTGATAATGGTCACTGGAGTGGCTCTAACAACGTTCGACACTCAACGCAAAACTCAATGTTCTATATTAAGGATAATAAGTTACGCGTGCAGGTTTACGGTAGAACCTACTACTCACGTTCGGATGGCTCGACAGGTTACCCACTATCACATTCGTTTGTGTTAGATTTAGATACGATGCAAATGGTGTCTGATAATGCGGATTGTTTCCCAATTAAGCTGTATAACAATCGTTGGGAAATGCCTGCGGGTAAATCTGCACCTGCGGAGGCGTGGACTGGCGCTAACCCGAACAATAACACGCCTGTGCTAGTTACGAGAGATAGAATGTTTGCATTCCGTTTCTACGGAACAACGTACATTCCGCGTGTGTATGAGTTTAAGTCTGGCACTGACCTTTCGGTTTTTGATTACTTGGAAGCTGGTAAGTCAAACCCGGTTACTATTACAGCCGCCGATTTTGAAGGTGCCTACGGTTCTGTTGTCGGTGCTGGTACTAAATACATGGGCTTCTTGCCGGGTAACAAGTTGATAAGTGATCAGTTAGATGGTCGTGATACAATTTGTACTTACGATTTGAACGGGAGTTATGTAGAAGACGGCACAGGTTGGGGTCCAACTTCTGACCGAAGATTATTGCCAAATGGTGACAATGCACGGTTAATTCGTGTGCCGATGAACTGGGATACGAATAAGAACGAAGGTTTCGTGATTTCGTCAACATACCCTACGAATAATTCCAAAATCGTGAATGAAACCCCAACGAGTCCGGTGAGTTGGAGTAGTGCATTAGTAGCAGACTTACGTACTCGTTTCCGTGCGTTACATCCAGCCACAGGCGGTATGTCGCTATGGGAAGACCGCGTGATGCTTCACGCATTCGGCGATTGGGAAAAGGGTGCTAACACACTTGTATGTTTTATCCAGTACACATATGTCTTCTGGGCGGATGCTGCTAAGTCTTCACGTCGTGTGTTCACTGCAACGCACAAGTGTACAATCACCATGGCTGGTGCTGCGGTAGCAAGCGTTAATATCGGCGAGTTAATCTCTAACCCTAACTGGAATAACTCAGTTGTAGGTTGGGGTAGTTTCGAGTCGTTTGGCATGAATACTTGTGGCACTACGGACGATGGTCACAAAGTCTACTGTTTGAACCATTCGCTATACGTGAGTTATGTAGGTCACTCAGGTGGTCGCATCTTCCAAATTGTCTTGGATAAAGATGACGGTTCCGTGTTGTATGAACGAAACCGAAATGCACACACTCACGTAATGTATGCGTCTTACTGGCATCCAGACATTGGTCTAATTGATACAGTAAACGAATATGCGGCGCAGGTTGTATCCGCTAAGAAACTTGGTAGAACTGTTGCAGAGATGAGCGGTAATACTTATCTATCATCGCAAATCATTCATGCTACTCAGGTAGCTTCTGGATGGGTTGTATACTTTACTGAGGCCGCACGTTTTTACGTTGCGGGTGAGAGTTTAGAACTACCAATCCAGAACTTCGACTTATCGAAGATGTCTGAGTTCCCAAATTATCAAAACAAGACTTTCTACATTTACGTGGAAGTTACGTACGATAATGAGGGTGTTGGTACTGCGAACTACAAGTTTAGTCTAACTAAGACAGCTGACTCCGAAACCAGCATGTACATTGGTTATGCCATCACAGGCGACACACAAATCAATGAACTAAAGGTTGACCGTGCTACACGCCTTGGTATGATTTATGAACTAGAGGAGCATATCTACGACCGTCGGGCGCACAATGACATCACCAACCTTGACAAGAACTCATTCAGTTTGGGTAAAGTTGAGAACATGGGGATGATACACACGTTAACATTGCCTACCTTTAAAGAGGTATTCAATTCGTGGGAGCGTATTTCGCACTTTAAGGACAGTGCCACGCAACCACATAACCCTGGTGAGTTATCAAGTTGGACGTATACAGAAGCGACAGATACAATCAAATGTACTATCAACTCTGCCACGTTTGTAGGCTTTGTAAGTCCTGCACCAGTAGGCGATTACGTTTTTGATACATTGGTCGGTTCACCTGACGGGGATAACGATGCGGTTGCAGTTATCCTAGCCTTCATTGAAGATGCTCAGGGTATCGAGCACACAATCTGTGCGGTGCGTGCACAGTCAATTGAAGGACATATGGCAATCAGCGGTAAGTTTGACATTTGGTACGATTACCATCTGCCGTCTCGTAAACTTATCAAAACTGGTGGCGGTACTGGCGCTAATGCAGGCGGTTGGGGCGGTAACTACTCACGTATCACTGCCGTACGTAAAGGTGAGAAGTTCGTGGTTTCGGCAACTCGTTTCATTAAAAGTACGAAGCTAGAAGACCATGGTAAAGAACACATCGAAGTTGTCCATGAGTTTGATTTGCAGCAGTTCACGGAGCTACAGCAGTTCAAATCTGGTGGTCGGTTCGGTTACGGCTGTATGTCTCAGCCTAACTCAACCTTTATCAACATCCTGCGCCCAGATGAGAACGTTGGTAACTACTACGCTTCTGCGGATACCATTCGTATCCTCTCGGAGCGTCAAGCAGAAGCAGTTGCGTTTGCTACAGGTACTATTGGCGGTGGTCATACACTCCCAATCCCTATCGGCTTTACGGCGGCTGACTGTCACGCGGTTGTTTCATTCAACCATAGTTCTTCAACTTCTAAACTGACCTACGCGAAAGCGGTACTGTCAGGACTTACTTGTAATATCACAATACGTCTAGCAGGTGGTTCAGTTGTCACGAATCCCTTGGGCTGTAATGCTCGTTACTATCTAATTGCTCGTAAGAATCCAGAGGTGTAA
Genome Context
Genome Context
Tertiary structure
PDB ID
e50927fe7942cabff17a7d19c60ab3bce13cb023a8ddeada5ba580ae57e3bc0f
Model Confidence
Very high
pLDDT > 90
pLDDT > 90
High
90 > pLDDT > 70
90 > pLDDT > 70
Low
70 > pLDDT > 50
70 > pLDDT > 50
Very low
pLDDT < 50
pLDDT < 50
Literature
| Title | Authors | Date | PMID | Source |
|---|---|---|---|---|
| Isolation and characterization of Vibrio bacteriophage with anti-biofilm activity | Kim,S.G. and Park,S.C. | 2019-04-18 | — | GenBank |