Protein

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Genbank accession
UKH49720.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MATSYKTLVTYLLDSVTTEFDIPYQYLARRFVVVSLLSDSGEPRVLTMGSEYRFVSKTRIALLRPWGANDGYSRIEIRRVTSATDRIVDFADGSILRAYDLNTAQLQALHVSEEGREQTAELSKAYMEQSQQSASESQQSASESKNARDETLAAIAGAGDKEMTIALIDDAPTRGDALVRVRQLVDGSKGQTVHSKFARMIDVLDFDGVLGDGVNDDSAGIERADRWCATNGYTLKFPRGLYRITRGIESYADWVGEGFATVGTFPLYDDKQFLVAGQRQKLAGSNILFDGVSTAMFTTARTDKFASFSYVIRKNGRSSYRSGAGIQKMGIILNFDFKDSTGAITYPNNDNSSTAGVGLLLVNVESKNIREVNVGGYYSLSGIVHFGIDPDNTHLTEVRTMGDIGLSVIGDSTGTNSGLNLIGCFIGANDHHSRSVIAGNERWGDTALYIDIPSAAGVGSRNGISMIGGTITTKTNVPMKLARCGAINFTNVVFENASQAGSAQAGGTKRFTGTPDTGDIGFVNCRLNAEQIKNSGALLDTATSATITVIGGNKDFGFEIWHGKSGIRMNAGSEQNFQMTNDPSTITSGLRFRRTSAGILEVTVDNERVLNMNKDGIGFVKTRKVVRPVASGAVTVDTNIVSLSGGTLDLNTITGTDGMNRVTLMANTTSDVITVKTTGGNIRIGTDFVLSGFKTLTLVYNGAFWLQEGGRPD
Physico‐chemical
properties
protein length:713 AA
molecular weight: 76648,00970 Da
isoelectric point:5,95089
aromaticity:0,07714
hydropathy:-0,19102

Domains

Domains [InterPro]
IPR005604
ATT
1–121
IPR005604 IPR012334
DC_1510
STR
1–420
DC_1510 DC_1786
UKH49720.1
1 713
Architecture
ATT
STR
RBD
ATT 1-121 | STR 122-690 | RBD 691-712 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
UKH49720.1
1 713
Domain Start End Length (AA) Confidence
N-terminal 1 217 217 0,9913
Central domain 218 568 352 0,9826
C-terminal 569 713 144 0,9449
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-217
Central
218-568
C-terminal
569-713

Taxonomy

  Name Taxonomy ID Lineage
Phage Rahnella phage Sarma103
[NCBI] 		2910780 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Rahnella woolbedingensis
[NCBI] 		1510574 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
UKH49720.1 [NCBI]
Genbank nucleotide accession
OL856139.1 [NCBI]
CDS location
range 34489 -> 36630
strand +
CDS
ATGGCAACGTCCTATAAAACACTCGTCACATATCTACTGGATTCAGTAACCACTGAGTTCGACATTCCATATCAATACCTTGCTCGTCGGTTCGTTGTTGTAAGCCTTCTGTCAGACTCAGGTGAACCTCGTGTTCTCACTATGGGTTCAGAGTATCGCTTCGTATCCAAGACTCGCATTGCGCTGCTGCGCCCTTGGGGAGCTAATGATGGCTACTCACGTATTGAGATTCGACGTGTGACCTCGGCTACAGACCGAATCGTGGACTTTGCTGACGGTTCTATCCTGCGTGCCTATGACCTGAACACTGCGCAACTACAGGCACTTCATGTTTCAGAAGAGGGTCGTGAGCAGACCGCTGAGTTAAGTAAGGCTTACATGGAGCAATCCCAACAGTCAGCCTCAGAATCCCAACAGTCAGCCTCAGAATCAAAGAATGCACGTGACGAAACACTTGCTGCTATTGCTGGTGCTGGAGACAAAGAGATGACCATTGCGCTGATTGATGATGCCCCGACTCGTGGTGATGCTTTAGTGCGTGTCCGACAGCTTGTTGATGGCTCAAAGGGTCAGACAGTTCACAGTAAGTTTGCCCGAATGATTGACGTGCTGGACTTTGATGGTGTGCTGGGAGATGGCGTCAATGATGATTCAGCAGGTATCGAACGAGCAGACCGTTGGTGTGCAACTAATGGCTACACCTTAAAGTTCCCTCGTGGTCTCTACCGAATCACACGCGGAATCGAGTCGTATGCTGACTGGGTAGGAGAAGGCTTTGCAACAGTTGGCACCTTCCCGCTGTACGATGACAAGCAGTTCCTCGTTGCGGGTCAACGTCAGAAACTTGCAGGTTCCAACATCCTGTTCGATGGTGTGTCAACAGCAATGTTCACCACAGCCCGTACCGACAAGTTCGCCTCATTCTCTTATGTAATCCGTAAGAATGGTCGTTCATCGTACCGGTCAGGTGCAGGTATTCAGAAGATGGGTATCATCCTCAACTTCGACTTCAAGGATTCAACAGGTGCCATTACGTATCCAAACAACGACAACAGTTCGACTGCCGGTGTTGGGTTGCTTCTGGTTAACGTTGAGTCCAAGAACATTCGTGAAGTTAACGTTGGTGGTTACTACTCGCTTTCCGGTATCGTACACTTTGGTATCGACCCTGATAACACACATCTAACAGAAGTGCGCACGATGGGTGACATCGGACTTTCAGTCATTGGTGACTCAACAGGAACCAACTCAGGGTTAAACTTGATTGGATGCTTCATTGGGGCGAACGACCATCACAGCCGTAGTGTAATCGCTGGGAACGAACGTTGGGGTGATACTGCCTTATATATTGATATCCCGAGTGCTGCTGGCGTAGGGAGCCGTAATGGTATCTCTATGATTGGCGGTACTATCACAACTAAGACTAACGTGCCTATGAAACTGGCTCGGTGTGGCGCTATTAACTTCACCAACGTTGTCTTTGAGAACGCCTCTCAAGCTGGCTCTGCGCAAGCTGGAGGGACTAAGCGATTCACAGGTACTCCTGATACTGGTGACATTGGGTTCGTCAACTGCCGATTAAATGCCGAGCAGATTAAGAACTCAGGGGCACTTCTGGATACAGCTACCAGTGCAACCATCACAGTTATTGGCGGCAACAAAGATTTCGGTTTTGAGATTTGGCATGGTAAGTCAGGTATCCGAATGAACGCTGGCTCTGAGCAGAACTTCCAGATGACTAATGACCCTTCAACCATCACATCAGGTCTTCGCTTCCGTAGAACATCTGCTGGTATTCTTGAAGTAACAGTGGATAACGAGCGTGTTCTTAACATGAACAAAGATGGTATTGGTTTCGTTAAGACCCGTAAGGTTGTTCGTCCGGTGGCAAGTGGTGCTGTAACAGTTGATACCAACATCGTGTCACTAAGTGGTGGCACCCTCGACTTGAACACAATCACGGGCACTGACGGAATGAACAGGGTTACCCTTATGGCGAACACAACCTCTGATGTCATCACTGTGAAGACGACTGGTGGTAACATCCGAATCGGAACAGACTTTGTGTTGAGTGGTTTCAAAACGCTGACTCTGGTTTACAACGGTGCCTTCTGGCTTCAGGAGGGTGGTCGTCCAGACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
b2a473d03fc51b4f612643d63eb921b277f56c2c532839abac8a66a89cf29308
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7282
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Rahnella phage Sarma103 Dislers,A., Zrelovs,N. and Kazaks,A. 2012-10-15 — GenBank