Protein

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Genbank accession
WKV23499.1 [GenBank]
Protein name
short tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence RBPdetect
Probability 0,91
Protein sequence
MQNNTLKHISDESKYVTFDPTNSGFNENITNVQDALSAISVDGISGVPQATETVAGKARIATQLEVDAGVSADTFITPATLSYRMQRPEASTTVLGVTQYATDEEAIAGTATNRTIVASSLKATIDNVFIVRTSTETSNGVLKISSTPAAQAGVDDTTAMTPLKTKQAIAAATALIPAWGPATESEQGVVRLATLSQLRDPNIRDGYSVSPFTLNQWQSTESNLGAIKLATSGHMDGGSDHTTAVTPYRFASTRATTGRAGTTILSNDLNGDGSKALSANSAVLPSNRAAVSAGVYEHDTAADNKYMTRNNLKAYLPVGTMTLAAYNYDTGNCLKCNGRWLNKHQWPELFAVIGFTYGGDWGDNFAIPDMRGLVPRGFDDGRGLDPGRGFGSYQEDTMQQITAGWTMDDQAVTSNYPPSGACEARDYGSVNYDAGSDDRKWRGFRMYFDSARQTRVSHETRQKNLALNYVIVAR
Physico‐chemical
properties
protein length:474 AA
molecular weight: 50864,67100 Da
isoelectric point:5,37358
aromaticity:0,07806
hydropathy:-0,39578

Domains

Domains [InterPro]
DC_0176
STR
1–450
DC_0176
IPR037053
ATT
305–371
IPR037053
SSF88874
STR
309–471
SSF88874
IPR011083
ATT
319–375
IPR011083
WKV23499.1
1 474
Architecture
STR
ATT
STR
STR 1-304 | ATT 305-375 | STR 376-471 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage SEA1
[NCBI] 		3061287 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella typhimurium
[NCBI] 		90371 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WKV23499.1 [NCBI]
Genbank nucleotide accession
OQ927978.1 [NCBI]
CDS location
range 83715 -> 85139
strand +
CDS
ATGCAAAACAACACTCTAAAACACATATCAGATGAATCCAAATATGTAACATTTGACCCAACTAATAGTGGTTTTAATGAAAATATAACTAATGTGCAGGATGCTTTATCTGCTATTAGTGTTGATGGTATTTCAGGAGTTCCACAAGCTACAGAAACCGTCGCAGGTAAAGCCAGAATTGCAACTCAATTGGAAGTCGATGCTGGTGTTTCTGCGGATACATTTATAACACCAGCAACGTTATCATATAGGATGCAACGTCCAGAAGCGAGTACAACTGTACTTGGTGTAACTCAATATGCAACTGATGAAGAGGCTATAGCTGGAACTGCTACAAACCGCACTATTGTTGCGTCATCGTTGAAGGCTACTATAGATAATGTTTTTATAGTCAGAACATCAACTGAAACTTCCAACGGTGTTTTAAAAATATCATCTACACCGGCTGCTCAAGCCGGTGTAGATGATACTACAGCAATGACACCATTAAAAACCAAACAAGCTATAGCTGCAGCAACTGCTCTTATTCCAGCTTGGGGACCTGCTACTGAATCAGAGCAAGGTGTAGTTCGTTTGGCAACATTGTCTCAATTAAGAGACCCTAATATAAGAGACGGTTATTCAGTGTCTCCATTTACGTTGAATCAGTGGCAATCTACTGAGTCAAATTTAGGTGCTATTAAGCTTGCAACATCAGGTCATATGGATGGAGGTTCTGACCATACAACTGCTGTAACTCCATATCGTTTTGCTTCTACTAGAGCGACAACGGGAAGAGCAGGGACAACTATTTTGTCTAACGATTTGAATGGAGATGGCTCTAAAGCATTATCAGCTAACTCAGCAGTTCTTCCAAGTAATAGAGCGGCAGTATCAGCTGGAGTATATGAACATGATACTGCAGCTGATAACAAGTACATGACACGAAATAATCTTAAAGCTTATTTACCTGTTGGTACTATGACACTTGCTGCTTATAATTACGACACCGGTAATTGCTTGAAATGTAATGGCCGTTGGTTAAATAAGCATCAATGGCCTGAATTATTTGCTGTCATTGGATTTACTTATGGCGGAGATTGGGGAGATAACTTTGCTATTCCTGATATGCGCGGCTTAGTTCCACGCGGATTTGATGATGGCCGCGGTCTTGACCCAGGACGAGGTTTTGGCAGTTATCAAGAAGATACGATGCAGCAAATAACTGCTGGATGGACAATGGATGACCAAGCAGTAACTTCAAACTATCCTCCTTCGGGAGCCTGTGAAGCTAGAGATTATGGCTCTGTCAACTATGACGCAGGTTCTGATGATAGAAAATGGCGCGGATTTAGAATGTATTTCGACTCAGCTAGACAAACTCGAGTTTCTCATGAAACTCGCCAGAAGAACCTTGCACTTAACTATGTAATTGTAGCTCGATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
1fc10464b4643775e1a103e8fe6bfee52cdbb2e4238051fc379ae072874d1f11
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7456
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation, identification and characterization of lytic, wide host range bacteriophages from waste effluents against Salmonella enterica serovars Akhtar,M., Viazis,S. and Diez-Gonzalez,F. 2014 — GenBank
Accurate and sensitive detection of Salmonella in foods by engineered bacteriophages Nguyen,M.M., Gil,J., Brown,M., Cesar Tondo,E., Soraya Martins de Aquino,N., Eisenberg,M. and Erickson,S. 2020 — GenBank