Protein

View in Explore
Genbank accession
XCN26633.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence RBPdetect2
Probability 0,73
Protein sequence
MCGLVGFCATTNASDNEIALLKSLLAVDIIRGAHATGLAKIDPVKNEVGIHKRAVDAYDFLADPETKEFLDKGRARIYMGHNRYATMGDKTDHANAHPFQVDHITMVHNGTVDSWGLHLLDGNDKYNVDSNMLCATIANHGAKKTFEEKFSGAAAVVWWDSKERTLNFIRNDDRPLFMAVTTTGTIVWASEPGMLKVFLERPNAKIRLRSPIAELKAEVLVTIPFTEAGVRKGAEPQTTPVTFLDLPIPESERQAAAWWGRYVGVSDYEDYSRSQGSQAGTKGSQAGSSYGTSGDAYARNTLRINNNLDAAGSTFKHRQLVTFDVVKVEAYANGSEYGTVTGIEREENLLIEAHGINVAKVHGYTVLRGSISNAYFIGQDRDLKVTVEDLAVSCLDPKHRPTPGETTPVLRIGTISSETKSHSKPRVQVGGTSGNTPPANISYPLKVQGHTFNNVHVFRDFVSQGCASCGKIPTAYDQRNRHLTVYEGAKFTGSLDECEFICGECVIENK
Physico‐chemical
properties
protein length:510 AA
molecular weight: 55788,08330 Da
isoelectric point:6,39106
aromaticity:0,08039
hydropathy:-0,34471

Domains

Domains [InterPro]
cd00352
STR
2–198
cd00352 DC_0532
IPR029055
ATT
2–199
IPR029055
IPR017932
STR
2–226
IPR017932
IPR029055
ATT
2–238
IPR029055
IPR029055
ATT
2–240
IPR029055
PF13522
STR
74–191
PF13522
XCN26633.1
1 510
Architecture
ATT
STR
ATT 2-240 | STR 241-510
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XCN26633.1
1 510
Domain Start End Length (AA) Confidence
N-terminal 1 132 132 0,2105
Central domain 133 458 327 0,6979
C-terminal 459 510 51 0,7731
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-132
Central
133-458
C-terminal
459-510

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage vB_PaeP_FBPa39
[NCBI] 		3231239 No lineage information
Host Pseudomonas sp.
[NCBI] 		306 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XCN26633.1 [NCBI]
Genbank nucleotide accession
PP813863 [NCBI]
CDS location
range 14328 -> 15860
strand -
CDS
ATGTGTGGATTGGTAGGCTTCTGTGCCACAACTAACGCGAGTGATAACGAAATCGCTCTTCTCAAATCCCTCCTGGCCGTGGATATTATCCGTGGTGCCCACGCCACTGGTCTGGCCAAGATCGACCCGGTTAAGAACGAGGTAGGAATTCACAAGCGGGCAGTAGATGCCTACGACTTCCTGGCTGATCCTGAAACCAAGGAGTTCCTGGATAAGGGTCGGGCTCGCATCTACATGGGACATAACCGTTACGCCACCATGGGTGACAAGACGGACCATGCGAACGCCCACCCCTTCCAGGTGGACCACATCACCATGGTACACAACGGAACTGTGGATTCCTGGGGTCTCCATCTGCTGGACGGCAATGACAAGTACAACGTGGACTCTAACATGCTGTGCGCTACCATTGCCAACCACGGCGCCAAGAAGACCTTCGAAGAGAAGTTCTCCGGTGCTGCTGCGGTAGTCTGGTGGGACTCCAAGGAACGTACCCTGAACTTCATCCGCAACGATGACCGTCCGTTGTTCATGGCAGTGACCACCACTGGTACCATCGTGTGGGCATCCGAGCCTGGTATGCTCAAGGTTTTCCTGGAGCGTCCCAACGCTAAGATCCGCCTTCGTTCTCCCATCGCTGAACTGAAGGCTGAAGTCCTGGTAACTATCCCATTCACGGAGGCCGGAGTGCGAAAGGGTGCAGAACCCCAGACCACTCCGGTTACATTTCTCGACCTTCCCATCCCCGAAAGCGAAAGGCAAGCGGCGGCATGGTGGGGTCGCTACGTCGGTGTCTCAGACTACGAGGACTATAGCCGAAGCCAAGGCAGCCAAGCGGGAACGAAAGGCAGCCAAGCGGGCTCGTCGTATGGAACGTCTGGCGATGCGTACGCAAGGAACACCCTCCGGATCAACAACAACCTCGATGCAGCAGGTAGCACCTTCAAGCACCGGCAGCTCGTCACCTTCGATGTTGTCAAGGTCGAGGCCTACGCCAACGGAAGCGAGTACGGAACTGTCACTGGAATCGAGCGTGAAGAAAACCTTCTCATCGAAGCTCATGGCATCAACGTCGCCAAAGTCCACGGCTACACCGTCCTCCGAGGAAGTATCTCCAACGCCTACTTCATCGGCCAAGACCGTGATCTCAAGGTTACTGTCGAGGATCTGGCGGTAAGCTGTCTGGACCCAAAGCATCGGCCGACTCCTGGGGAGACTACCCCAGTGTTGAGGATTGGGACGATCTCATCGGAGACGAAATCCCATTCTAAACCCAGGGTTCAAGTCGGCGGCACCTCTGGGAATACCCCTCCGGCCAACATCAGCTACCCCTTGAAGGTTCAGGGACACACGTTCAACAACGTGCATGTCTTTCGGGACTTCGTATCCCAGGGGTGTGCATCCTGCGGTAAGATCCCTACCGCGTATGACCAGCGTAATCGTCATCTGACGGTGTACGAAGGTGCCAAGTTCACAGGTAGCCTGGATGAGTGTGAGTTCATCTGCGGCGAATGCGTAATCGAAAATAAATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
ba672378e671b322c90b1eb8a4876f5f8af5d1420976382c50d2d24efa2a4f78
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5894
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Defense systems in Pseudomonas aeruginosa van den Berg,D.F. and Costa,R.A. 2024-11-19 — GenBank