Protein

View in Explore
Genbank accession
WPK42347.1 [GenBank]
Protein name
tail tubular protein B
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MAKTVGSLPSLIQGVSEQEPHNRAPGKMWESVNMMDSPTRGKVRRRGTVMSDHKPLASAVAGALAEAGRMQEYTFIIDGREFSLTYRPSASALGKDYFATLLAKDTGDFYDIVYEDSTWVDNLIAGGVSAIACVGRYVYIAGNTTLPRATSTEAWNSPANLQKLSGWIREGAYSRKFTARLTLTDGTTKDYSYTTKPAAYPELLDTSDIPFYKPGNADPKEPDPEYQKKVNDRVNAYEGNKTAWIKEAAEDIVPANIARKIAELIVADGYFASSMESCVVIDDPAFNDIRMLDDGAGTLVSYAGKEVSDPQFVTLYHWSGKVVRVRPSGGGDKESYYLKAVPLDGADGWAKVEWVETAGVVHEIHNVVSQLIVDVPNKKAYVAQDGQGLKSLAPHMGDHPLYKSNAVGDAVTAPLPHYFGRPITCMTVFQDRLMLSADNIVNFSRSSDYLNFFRQTVLNVQENDPIEIFAHGSEGDTIKKAVMFERDLVLFGELRQYAISGREFLSPTNPNINVIGAFEGGATANPIVSGNFLFFGKHANERTGLHQMQPGDTPQTTVVYEVSQELDSWISGEPVQLLGMTQPDMVTYRTDADSSIWYTYKYSDDRSVGRIMSSWGKQQYAPELGSVASITHYRGDQFVVTLRTAGGKDYWFADRLNLNADLSKLPHLDSQVPYGSETEWHKAVQEKLFVAATAASDYYLMGAPRPQAEDFIEQAPGVEPALVVGSVSPAYFQLTNPYMRDSQGQPILNGRLTLTSYGFHLADTGGLSAYVLAPTKDRTLLFEGRVLGHTSNIIGRQPVFSGMRTVSVGKETRACIVELRSEDWQPLRVTGAEWSGQVFMPRARGLY
Physico‐chemical
properties
protein length:847 AA
molecular weight: 93339,87280 Da
isoelectric point:5,42667
aromaticity:0,10153
hydropathy:-0,31606

Domains

Domains [InterPro]
DC_0058
STR
1–847
DC_0058
IPR058003
TTP
235–842
IPR058003
WPK42347.1
1 847
Architecture
STR
STR 1-847
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WPK42347.1
1 847
Domain Start End Length (AA) Confidence
N-terminal 1 190 190 0,8806
Central domain 191 401 212 0,3039
C-terminal 402 847 445 0,3939
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-190
Central
191-401
C-terminal
402-847

Taxonomy

  Name Taxonomy ID Lineage
Phage Stenotrophomonas phage StenM_174
[NCBI] 		3096151 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Stenotrophomonas maltophilia
[NCBI] 		40324 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Lysobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WPK42347.1 [NCBI]
Genbank nucleotide accession
OR729839 [NCBI]
CDS location
range 24883 -> 27426
strand +
CDS
ATGGCTAAGACCGTTGGCAGCTTGCCATCACTGATTCAGGGCGTCTCCGAACAGGAGCCGCACAACCGGGCACCCGGTAAAATGTGGGAGAGCGTCAACATGATGGACTCCCCGACTCGTGGTAAGGTGCGCCGTCGCGGTACTGTCATGTCCGACCACAAGCCTCTGGCGTCCGCAGTAGCAGGCGCGCTCGCCGAGGCAGGGCGTATGCAGGAGTACACCTTCATCATCGACGGACGGGAGTTCAGCCTCACGTACCGACCGAGTGCCAGTGCGCTGGGCAAGGATTACTTTGCCACGCTTCTGGCGAAGGATACCGGGGACTTCTACGACATCGTTTACGAGGACAGCACATGGGTAGACAACCTGATCGCGGGCGGAGTCTCGGCAATCGCCTGTGTAGGCCGCTACGTGTACATCGCGGGGAACACCACCCTGCCGCGCGCGACTTCTACCGAAGCGTGGAACTCACCCGCCAACTTGCAGAAGCTGTCGGGTTGGATTCGAGAAGGCGCGTACAGCCGGAAGTTCACGGCACGCCTCACGCTAACTGACGGCACGACCAAGGACTACAGCTACACGACCAAGCCCGCAGCGTACCCGGAACTGCTGGACACCAGCGACATCCCGTTCTACAAGCCGGGCAACGCTGACCCGAAGGAACCGGACCCGGAGTACCAGAAGAAGGTCAACGACCGAGTGAACGCCTACGAGGGCAACAAGACGGCGTGGATCAAGGAAGCTGCCGAGGACATCGTACCAGCCAACATCGCACGCAAGATCGCTGAGTTGATCGTGGCCGATGGGTACTTCGCCAGTTCGATGGAGTCCTGCGTCGTGATCGATGATCCGGCGTTCAACGACATCCGTATGCTGGACGATGGCGCTGGTACGCTGGTGTCGTACGCAGGCAAGGAAGTGTCGGACCCGCAGTTCGTCACCCTGTACCACTGGTCCGGTAAGGTCGTCCGTGTCCGCCCGAGTGGCGGCGGCGACAAGGAAAGCTACTACCTCAAGGCCGTACCGCTCGACGGCGCTGACGGTTGGGCCAAGGTGGAATGGGTGGAGACCGCCGGTGTGGTGCACGAGATTCACAACGTCGTGTCCCAGCTGATCGTGGACGTGCCGAACAAGAAGGCGTACGTTGCGCAGGACGGTCAGGGCTTGAAGTCTCTGGCTCCGCACATGGGGGACCATCCGCTGTACAAGTCCAACGCTGTTGGCGATGCCGTCACCGCTCCGCTGCCGCACTACTTCGGTCGGCCGATCACCTGCATGACGGTGTTCCAAGATCGACTGATGCTCAGCGCTGACAACATCGTGAACTTCTCGCGCTCTTCGGACTACCTGAACTTCTTCCGGCAGACCGTGCTGAACGTGCAGGAGAACGACCCCATCGAAATCTTCGCCCACGGTTCCGAGGGCGACACGATTAAGAAGGCGGTCATGTTCGAGCGTGACCTCGTGCTGTTCGGCGAGTTGCGCCAGTACGCGATCAGTGGTCGCGAGTTCCTGTCCCCGACGAATCCGAACATCAACGTGATCGGTGCGTTCGAGGGCGGTGCTACCGCGAACCCGATTGTCTCCGGCAACTTCCTGTTCTTCGGGAAGCACGCGAACGAGCGCACGGGCCTGCACCAGATGCAGCCGGGCGATACTCCGCAGACCACCGTGGTGTACGAGGTGTCGCAGGAACTGGACTCGTGGATCAGCGGTGAGCCGGTGCAGCTGCTGGGCATGACCCAGCCGGACATGGTGACTTACCGTACGGACGCCGACAGTTCGATTTGGTACACGTACAAGTACAGTGATGATCGCTCCGTTGGCCGTATCATGTCCAGCTGGGGCAAGCAGCAGTACGCGCCGGAACTCGGCTCGGTTGCTTCCATCACGCACTACCGTGGCGATCAGTTCGTTGTCACCCTGCGCACCGCAGGCGGCAAGGACTACTGGTTCGCCGACCGGCTTAACCTCAACGCCGACCTGTCGAAGCTCCCGCATCTGGACTCCCAAGTCCCGTACGGTAGCGAGACTGAGTGGCACAAGGCCGTGCAAGAGAAGCTGTTCGTGGCAGCAACGGCAGCGTCGGACTACTACCTGATGGGCGCGCCGCGTCCGCAGGCGGAGGACTTCATCGAGCAGGCTCCGGGTGTAGAACCCGCATTGGTCGTGGGCAGCGTATCGCCCGCGTACTTCCAGTTGACGAATCCCTACATGCGCGATTCGCAGGGTCAGCCAATCCTCAATGGGCGACTGACTCTTACTTCGTACGGCTTCCATCTGGCGGACACCGGCGGCCTCTCGGCCTACGTGTTGGCTCCGACCAAGGATCGTACTTTGCTGTTTGAGGGCCGCGTGCTGGGGCATACCAGCAACATCATCGGGCGTCAGCCGGTCTTCTCCGGCATGCGTACCGTAAGCGTAGGCAAGGAAACCCGAGCCTGCATCGTTGAACTGCGGTCCGAGGACTGGCAGCCTCTTCGCGTCACTGGCGCTGAGTGGTCTGGTCAGGTCTTCATGCCGCGCGCACGAGGGCTGTACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
1b8776d590a940b7b6e0a931721d4ca648314bd7cf535d640e3335accc161d10
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3103
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
StenM_174: A Novel Podophage That Infects a Wide Range of Stenotrophomonas spp. and Suggests a New Subfamily in the Family Autographiviridae Morozova,V.V., Yakubovskij,V.I., Baykov,I.K., Kozlova,Y.N., Tikunov,A.Y., Babkin,I.V., Bardasheva,A.V., Zhirakovskaya,E.V. and Tikunova,N.V. 2023 38275953 GenBank