Protein

View in Explore
Genbank accession
QQG32131.1 [GenBank]
Protein name
hinge connector of long tail fiber distal connector
RBP type
TSP
Evidence RBPdetect
Probability 0,86
Protein sequence
MADLKANSTVGGSPIWHRGNFPLYPVGDTLLYKTYKVYTEHDKPQAADNDFVSKSLGGEYAKSVNFVEGLSFDDTEGNPVMLGVPKNTSPDITYKAAMQVTGAFALETPDNQPFVIFDPVKTVGTDVYRLIVMGDVLGRQVFDESGRVFSPGNTPSKTQVGLGLVDNAKQVQLEQHNVQTMEGPLAAPNMFSLNAASEPGHVPRFDQIVIKDSIQDFGYYS
Physico‐chemical
properties
protein length:221 AA
molecular weight: 24084,73990 Da
isoelectric point:4,81440
aromaticity:0,09955
hydropathy:-0,29638

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QQG32131.1
1 221
Domain Start End Length (AA) Confidence
N-terminal 1 63 63 0,9828
Central domain 64 210 148 0,1887
C-terminal 211 221 10 0,9584
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-63
Central
64-210
C-terminal
211-221

Taxonomy

  Name Taxonomy ID Lineage
Phage Citrobacter phage CkP1
[NCBI] 		2799684 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Citrobacter koseri
[NCBI] 		545 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QQG32131.1 [NCBI]
Genbank nucleotide accession
MW239124 [NCBI]
CDS location
range 155824 -> 156489
strand +
CDS
ATGGCCGATTTAAAAGCAAATAGCACAGTCGGCGGATCACCTATTTGGCACAGAGGCAATTTTCCTCTTTATCCAGTAGGAGACACGCTACTTTATAAAACCTACAAAGTTTATACAGAACATGATAAGCCGCAAGCTGCAGATAACGATTTTGTTTCTAAATCGTTGGGAGGAGAATACGCAAAATCTGTTAACTTTGTAGAAGGTTTATCTTTCGACGATACAGAGGGTAATCCAGTGATGCTTGGGGTTCCCAAGAACACTAGCCCTGATATAACATATAAAGCTGCAATGCAAGTTACTGGAGCATTCGCTCTGGAAACCCCTGATAACCAGCCGTTCGTAATTTTTGACCCTGTAAAAACTGTTGGAACTGATGTTTATCGTTTGATAGTAATGGGAGATGTTCTCGGGCGTCAAGTTTTCGATGAATCTGGAAGAGTATTTTCTCCAGGCAATACACCGTCAAAAACTCAAGTTGGTTTAGGTTTAGTTGATAATGCTAAACAAGTTCAGTTAGAACAACATAATGTTCAAACAATGGAAGGTCCTTTAGCTGCTCCTAATATGTTTAGTTTAAATGCAGCGTCTGAACCAGGACACGTTCCGCGTTTTGATCAAATCGTTATCAAAGACTCAATTCAAGATTTCGGCTATTATAGCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
365e152c3ae4e73203b790957f2ad510e40aca819e9cc91c53342a26e21d349e
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,2859
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
CkP1, a S16-like broad-host-range myovirus, recognizes Citrobacter koseri lipopolysaccharide through its long tail fibres Oliveira,H., Santos,S., Pires,D., Pinto,G., Carrera,J., Briers,Y., Schmelcher,M., Dotsch,A. and Azeredo,J. 2022 — GenBank