Protein

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Genbank accession
WVX90730.1 [GenBank]
Protein name
virion structural protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MAFNYTPLTESQKLKDMYPKVNDIGNFLKTEVNLSNVKTISGVDFNNILSSIPDSGNYYVTTSKNQPSGESFNGFVRLDKRSNNYYKIYYSPFSSNNMYVKTYANGTVYNWVRFKLDEGSLYEEGNTLNVKELSESTTQYATLVNPPKENLNTGWVNYKESKNGVSSLVEFNPINSTSTFKMIRKLPVQEQNPNLLRDSLFVYPETNASNIRTDNWNTPPFWGYTDNSGRSGVRFRGENTIQVDDSGNTYPTAMTNRFKMGKELSVGDTVTVSVYAKINDPALLKDNKASFELAGYDTVDDTKNPYTGGRREITASEITTEWKKYSFTFTIPENTIGASGVKVNYVSLLLRMNCSSSKGNGAVVYYALPKIEKSSKVTPFITHENDVRKYDEIWSNWQEVISKDELKSHSPVDIEYNDYFKYQWWKDEVNEKSLKDLAMTVPQGYHTFYCQGSIEGTPKGRSIRGTIQVDYDKGDPYKPNKFIKLLFTDVEGIPYTLYYGGHNHGWKPLRQSETSTLLWEGTLDFGSTESVSLNDSLDNYDLIEVTYWTRSAGYLATKRLDVKDTSNVLYIRDFNMANNSTSTSIDFFEGYCSFPTRTSVQPEMVKSITLDGSTNATKVASWNEMERIKIYNIMGINRG
Physico‐chemical
properties
protein length:639 AA
molecular weight: 72709,14860 Da
isoelectric point:5,82818
aromaticity:0,12520
hydropathy:-0,63725

Domains

Domains [InterPro]
DC_0650
STR
3–405
DC_0650
cd19958
STR
36–114
cd19958 G3DSA:2.60.120.260 DC_0448
IPR003305
CBM
221–336
IPR003305
WVX90730.1
1 639
Architecture
STR
STR 3-638 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WVX90730.1
1 639
Domain Start End Length (AA) Confidence
N-terminal 1 293 293 0,5445
Central domain 294 503 211 0,2158
C-terminal 504 639 135 0,9584
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-293
Central
294-503
C-terminal
504-639

Taxonomy

  Name Taxonomy ID Lineage
Phage Staphylococcus phage 184DA
[NCBI] 		3110532 Uroviricota > Caudoviricetes >
Host Staphylococcus sp.
[NCBI] 		29387 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WVX90730.1 [NCBI]
Genbank nucleotide accession
OR885926 [NCBI]
CDS location
range 64067 -> 65986
strand -
CDS
ATGGCATTTAATTATACGCCTCTTACTGAATCACAAAAGTTAAAAGATATGTACCCTAAGGTTAATGATATAGGTAATTTCTTAAAGACAGAAGTTAATCTAAGTAATGTAAAGACTATAAGCGGTGTTGACTTTAATAACATCTTATCATCTATCCCTGATAGCGGTAATTATTATGTTACTACTTCTAAAAATCAACCATCGGGAGAGAGTTTTAATGGGTTTGTTAGACTTGACAAAAGAAGTAATAACTATTACAAAATATACTATTCACCTTTTAGCAGTAATAACATGTATGTTAAGACCTATGCTAATGGTACTGTATACAATTGGGTTAGGTTTAAATTAGATGAAGGTAGCTTATATGAAGAAGGTAATACACTTAATGTAAAAGAACTTTCTGAATCTACAACACAATATGCAACATTAGTTAATCCTCCTAAAGAGAACTTAAATACAGGATGGGTTAATTATAAAGAAAGTAAAAATGGTGTTTCTTCTTTAGTAGAATTTAACCCGATTAACTCTACCTCAACTTTCAAGATGATAAGAAAATTACCAGTACAAGAACAAAATCCTAATTTACTGAGAGATAGTTTATTTGTTTACCCTGAAACTAATGCTTCAAATATTAGAACAGATAATTGGAATACACCTCCTTTTTGGGGATACACAGATAATAGTGGTCGTTCAGGTGTTAGGTTTAGAGGTGAAAATACTATACAGGTTGATGATAGTGGTAATACCTATCCTACAGCAATGACTAATAGATTTAAGATGGGTAAGGAGCTTTCTGTAGGAGATACAGTTACTGTATCTGTATATGCTAAAATTAATGACCCTGCTTTACTTAAAGATAATAAAGCATCTTTTGAGCTAGCAGGATACGATACTGTAGATGATACTAAGAACCCTTATACAGGAGGACGTAGGGAAATAACAGCAAGTGAGATAACAACTGAGTGGAAAAAATATTCTTTCACATTCACGATACCTGAAAATACAATTGGAGCATCAGGAGTTAAAGTTAATTATGTATCTTTACTACTAAGAATGAATTGTTCATCTAGTAAAGGTAATGGTGCTGTGGTATACTATGCCTTACCTAAAATAGAAAAATCATCTAAAGTTACACCATTTATTACACATGAAAATGATGTTCGTAAATATGATGAGATTTGGTCTAACTGGCAAGAAGTTATTAGTAAAGATGAATTAAAAAGTCACTCTCCTGTAGATATAGAATATAATGATTATTTTAAATATCAGTGGTGGAAAGATGAAGTTAATGAAAAGAGTTTAAAAGATTTAGCTATGACAGTACCACAAGGCTATCATACATTTTATTGTCAGGGCTCTATCGAAGGAACACCTAAGGGACGCTCTATTAGAGGAACTATTCAAGTGGATTATGACAAAGGTGACCCATACAAACCTAATAAGTTTATTAAACTGTTATTTACTGATGTAGAAGGTATACCTTATACATTATACTACGGAGGACATAACCATGGGTGGAAACCTTTAAGACAATCAGAAACTTCTACTTTATTATGGGAAGGTACTTTAGATTTTGGGTCTACAGAATCTGTTAGCTTAAATGACTCATTAGATAATTATGACTTAATTGAGGTAACTTATTGGACTCGTTCAGCAGGGTATTTGGCTACCAAAAGATTAGATGTAAAAGATACATCAAATGTACTTTATATTAGGGATTTTAATATGGCAAATAATTCCACAAGTACTAGTATAGACTTTTTTGAAGGATACTGTAGTTTCCCTACTAGAACATCTGTACAACCTGAAATGGTAAAATCTATAACTTTAGACGGGTCTACAAATGCAACAAAAGTAGCATCATGGAATGAAATGGAACGTATAAAGATATACAATATTATGGGAATTAATAGAGGATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
885c79eae1a95e38f5002e6bd25073bd7454abd810f6bcb2b55e34352146cfb2
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7103
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization of a newly isolated phage infecting non-aureus staphylococci isolated from bovine mastitis Wanecka,A., Marynowska,M., Wesolowski,W., Bloch,S., Nejman-Falenczyk,B., Neumann,J., Krol,J., Florek,M., Ulanicki,K., Napierala,A., Twardon,J., Wolska,B., Porebska,J., Ziubrzycka,A., Czeretowicz,I. and Benisz,M. 2019-04-22 — GenBank