Protein

View in Explore
Genbank accession
QVW28399.1 [GenBank]
Protein name
long tail fiber, distal subunit
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,81
TF
Evidence RBPdetect2
Probability 0,94
Protein sequence
MATLKSIQFKRSKTPGAKPTAAQLDEGELAINLRDRTIFTKSDQGQIIDLGFAKGGQVDGDVTINGTLRINGPLNNFGNFSTSGSITAGTSISAQTFRALQGSFYSRASNDTTSNAHLWFENADGSERGVIYARPQTTNAGELRIRIKQGTEGTANSEFYFRSINGGEFQANRILASDSLVTKRIAADTVIHGGKAFGVYDTDSLVNYVYPGTGEENGVNYLRKVRAKSGGTIWHEICTAQTGQADEVSWWTGSTPVSKQCGIRNDGRMIVRNSLALGTMTTDFPSSDYGNGGALGFGAYLALGDNGTGLRYQKTGVYDLVGSGLSVASVTPDSFRSTRKGLFGRSEDQGATWIMPGTNAAFLSVQTQADVNNAGDGQTHIGYNSGGKMSHYFRGKGQTNINTQEGMELNPGILKLVTGGNNVQLYADGTISSIQRIKFDNGVLLTGARADGIQLDAPTSLDGTKTILWGAGTRAGQNKNYISIKAWGNSFNTGGGNRETVWEVSDSQGYYFYAQRTNPASGETVGPVNFKFNGTVETGHIIGLGNISASGTGSFGGNVTMSNGLFVQGGSSITGQVKIGGTADALRIWNAEYGAIFRRSESNFYILPTNQNEGESGDIHSSLRPVRIGLNDGMVGLGRDSFIVDQNNALTTINSNSRINANFRMQLGQNAYIDIEASDGVRPAGCGSFASQNDANVRAPIYMNIERTAPSEYIPIVKQRYVQGDSTYSIGTLISQGDFRVHYHQGNSTTGTDLSWEFRRTGDFRLPGKIIVGNTTLGTDGNITGGSGNFANLNSTIESLKTDIVSSYPIGAPIPWPTDTPPNGYALMEGQTFDKGAYPKLAVAYPSGTIPDMRGQTIKGKPSGRAVLSAEADGIKSHNHGASASNTDLGTKTTSSFDYGTKTTSSFDYGTKTSNTTGNHNHTVSGTTSAAGNHQHSQTGPRGPNNQPTGVYPNGATAISGTNVLSFATSDKIVPGIGQYIAKSSTEGNHTHSWSGTTSTTGNHAHTVGIGAHSHSVGIGAHTHTVAIGSHGHTITVNNTGNTENTVKNIAFNYIVRLA
Physico‐chemical
properties
protein length:1059 AA
molecular weight: 111985,87710 Da
isoelectric point:8,35389
aromaticity:0,08121
hydropathy:-0,42993

Domains

Domains [InterPro]
DC_0538
STR
1–1057
DC_0538
IPR048390
ATT
486–628
IPR048390 IPR051934
IPR011083
ATT
811–858
IPR011083
QVW28399.1
1 1059
Architecture
STR
ATT
STR
ATT
STR
STR 1-485 | ATT 486-628 | STR 629-810 | ATT 811-858 | STR 859-1057 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QVW28399.1
1 1059
Domain Start End Length (AA) Confidence
N-terminal 1 410 410 0,1154
Central domain 411 609 200 0,3370
C-terminal 610 1059 449 0,8645
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-410
Central
411-609
C-terminal
610-1059

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage C6
[NCBI] 		2831681 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QVW28399.1 [NCBI]
Genbank nucleotide accession
MW679410 [NCBI]
CDS location
range 156588 -> 159767
strand +
CDS
ATGGCTACTTTAAAATCGATACAATTTAAAAGAAGTAAAACACCAGGAGCCAAGCCTACTGCAGCTCAGTTAGATGAAGGCGAACTGGCTATTAACTTGCGTGACCGCACTATTTTTACTAAGTCGGACCAGGGACAGATTATTGATTTAGGCTTTGCTAAAGGTGGACAAGTTGATGGCGATGTAACTATTAATGGAACTTTACGCATTAACGGCCCATTAAATAATTTTGGAAACTTTTCTACAAGCGGGTCAATTACGGCAGGCACGAGTATTTCGGCTCAAACTTTTAGAGCATTACAAGGCTCGTTTTATTCAAGAGCTTCAAACGATACAACATCGAATGCCCATTTATGGTTTGAAAATGCTGATGGCTCTGAACGTGGTGTTATATATGCACGTCCTCAAACTACAAATGCTGGTGAATTACGCATTAGGATTAAACAGGGGACAGAAGGCACTGCTAATAGTGAATTCTATTTCCGCTCTATAAATGGTGGTGAATTTCAGGCAAACCGTATTTTAGCATCAGATTCATTAGTAACTAAACGAATTGCAGCCGATACAGTTATCCACGGTGGCAAAGCCTTTGGTGTATATGATACAGATTCATTAGTTAATTATGTATACCCAGGCACAGGCGAAGAAAATGGTGTAAACTATCTTCGTAAAGTTCGAGCTAAGTCTGGCGGCACTATATGGCATGAAATCTGTACGGCCCAAACAGGTCAGGCTGATGAGGTTTCTTGGTGGACTGGTAGTACTCCAGTATCTAAACAATGCGGTATTCGTAATGACGGGCGAATGATTGTTCGTAATAGTCTTGCGCTTGGCACAATGACTACTGATTTTCCGTCAAGTGATTATGGTAATGGAGGTGCTCTAGGATTTGGCGCTTATTTAGCTTTAGGTGATAACGGCACAGGTTTACGTTATCAAAAAACCGGTGTTTATGATTTAGTCGGTTCTGGTTTATCTGTGGCCTCTGTTACTCCGGATAGTTTCCGTAGTACTCGTAAAGGTTTATTTGGACGTTCAGAAGACCAAGGTGCAACTTGGATTATGCCAGGTACGAATGCTGCCTTTTTATCAGTTCAAACCCAGGCTGATGTGAATAATGCAGGTGACGGTCAGACGCATATTGGCTATAACTCAGGCGGAAAAATGTCTCACTATTTCCGCGGTAAAGGTCAAACCAATATTAACACCCAAGAAGGCATGGAACTTAACCCAGGTATTCTTAAACTGGTAACCGGCGGTAATAATGTACAGCTTTATGCTGACGGCACTATTTCTTCTATTCAAAGAATTAAATTTGATAACGGGGTACTTCTTACCGGGGCTAGAGCTGACGGTATTCAACTTGATGCGCCTACATCATTAGATGGCACTAAAACTATACTGTGGGGCGCTGGTACTCGCGCAGGTCAGAATAAAAACTATATATCTATTAAAGCATGGGGTAATTCATTTAATACAGGTGGCGGTAATAGAGAAACTGTTTGGGAAGTTTCAGATTCACAGGGCTATTATTTTTACGCGCAAAGAACCAACCCGGCATCAGGTGAAACCGTCGGCCCTGTTAACTTTAAATTTAACGGAACTGTCGAAACAGGCCATATCATAGGCCTTGGTAATATAAGTGCCTCCGGTACAGGTTCTTTTGGTGGCAATGTTACTATGTCTAACGGTTTGTTTGTCCAAGGTGGTTCTTCTATTACTGGACAAGTAAAAATTGGTGGAACAGCAGATGCATTAAGAATTTGGAATGCCGAATACGGTGCTATTTTCCGTCGTTCAGAAAGTAACTTTTATATTCTTCCAACCAATCAAAATGAAGGCGAAAGTGGAGACATTCACAGCTCTTTGAGACCTGTGAGAATAGGATTAAACGATGGCATGGTTGGGCTAGGAAGAGATTCTTTTATAGTAGATCAAAATAATGCTTTAACTACAATAAACAGCAATTCTCGCATTAATGCCAATTTCAGAATGCAATTAGGACAAAATGCTTATATAGATATTGAGGCTTCTGACGGTGTTCGTCCTGCAGGGTGTGGTTCATTTGCATCCCAGAATGACGCAAACGTAAGAGCTCCGATTTATATGAATATAGAGCGTACTGCTCCTTCTGAATATATTCCTATTGTCAAACAACGTTACGTACAAGGTGATAGTACTTATTCTATTGGTACCTTAATTTCTCAAGGAGACTTCCGCGTTCATTATCACCAGGGCAATAGTACTACCGGAACTGATTTGAGTTGGGAATTCCGCCGCACCGGTGACTTCCGCTTACCTGGTAAAATTATTGTAGGCAACACAACTTTAGGAACTGATGGTAATATCACTGGTGGCTCTGGTAACTTTGCTAACTTAAACAGTACAATTGAATCACTTAAAACTGATATTGTTTCAAGTTATCCTATTGGAGCCCCAATTCCATGGCCAACGGATACTCCTCCTAATGGTTATGCTTTGATGGAAGGTCAGACCTTTGATAAAGGTGCTTATCCTAAGCTTGCTGTTGCATATCCTTCTGGTACTATTCCTGATATGCGTGGTCAAACTATCAAGGGTAAACCAAGTGGACGTGCTGTGTTAAGTGCAGAAGCTGATGGTATTAAGTCCCATAACCATGGTGCATCCGCATCTAATACAGATTTAGGTACTAAAACTACGTCAAGTTTTGATTATGGTACTAAAACCACTTCAAGTTTTGATTATGGTACTAAGACCAGTAATACCACTGGTAACCATAACCATACAGTAAGCGGTACTACTAGCGCAGCAGGTAACCACCAGCACTCACAGACCGGTCCAAGGGGTCCTAATAATCAACCAACAGGAGTATATCCTAATGGAGCTACTGCAATTAGTGGAACCAATGTTCTTTCTTTTGCCACAAGCGACAAAATCGTGCCTGGTATAGGCCAATATATTGCAAAGTCGTCAACAGAAGGTAACCATACACACTCTTGGTCTGGAACTACAAGTACCACAGGTAACCATGCCCACACTGTGGGTATTGGTGCCCATAGCCATTCGGTCGGTATTGGTGCTCACACTCACACGGTAGCGATTGGTTCACATGGTCATACAATCACTGTAAATAATACAGGTAATACAGAAAACACAGTTAAAAACATTGCTTTTAACTATATCGTTCGCTTAGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
a2b33f0f1883ada1f80f79782c1bb1584876c8fca5976cbd19575f49454e01cb
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5215
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Biological properties of an Escherichia lytic phage infecting 4 pathogenic Escherichia coli strains Lin,Y. and Zhu,W. 2019-04-18 — GenBank