Protein

View in Explore

Genbank accession

APZ82339.1 [GenBank]

Protein name

tail fiber protein

RBP type

TSP

Evidence DepoScope

Probability 1,00

TSP

Evidence GenBank

Probability 1,00

TSP

Evidence Phold

Probability 1,00

TSP

Evidence RBPdetect

Probability 0,91

TSP

Evidence RBPdetect2

Probability 0,95

Evidence UniProt/TrEMBL

Probability 1,00

Protein sequence

MDHTPDIQRDINNIQIDVTKFGVKGDGVTDDTAAMNRALKWIKDNGYDTAYIPSGTYMIDGVNRSTQYNVWRNGGIVVPSDVNIVMDYDTIIKVIPNDSWGYSAFYVGRASNVTISGGQIIGDKANHTYNKTLNKETNEWGFGICIEASNNIVVEGVRISECIGDGVIISPIGLATDPNYRTSTNVVVRRCIIDGSRRNNISVTGCEYIILEGNTLTNAGVEGVTPKFGIDIEGYGEGDIDYEFPLNITVKDNYVVGSKKASICNFNGYGVIITNNHVDSYLSYGFGTETVISDNVVKKLDSFACEIDVGITGLGVSNGFPGNNSVVSNNTVTGFSTGIDTRGADVLVTGNKVYQYDNVGIATWATNKVVISGNVVSGFVTTSDTTKYGQGIRLFTGSDISVLSNRISETKMGVYSQSTSDVVIKDNYIKRVGIGIQVGGTSAIVENNVLVQGDISDLGYKAEYAIQATGTTLKATIRGNYVQDFTGTPIYSYKATCKVLDNTIEGAVSYSAIQLNGDKHYVVGNRISMNRSNTTCYGIYIEYSTNSSIIDNTMYSISGNAMKNAITTNTTSTGTKIIANKIINGTIASHSTDTVTGNQLI

Physico‐chemical properties

protein length:	601 AA
molecular weight:	64610,38650 Da
isoelectric point:	5,03351
aromaticity:	0,08319
hydropathy:	-0,12962

Domains

Domains [InterPro]

IPR012334
STR
14–304

IPR012334 IPR006626 IPR006626 IPR006626 IPR006626 IPR006626 IPR006626 IPR006626 IPR006626

IPR011050
STR
15–298

IPR011050 IPR039448

IPR024535
ENZ
16–62

IPR024535 IPR039448 IPR006626 DC_1312

IPR012334
STR
20–304

IPR012334 IPR011050

IPR006626
Unmapped
110–148

IPR006626 IPR006626 IPR006626 IPR006626 IPR012334

APZ82339.1

1 601

Architecture

STR

ENZ

RBD

STR

STR 14-304 | ENZ 323-356 | RBD 357-366 | STR 367-594 |

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Domains [InterPro]

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR012334	STR	IPR012334	14	304	Merged direct domain	Pectin lyase fold	Central	Low	Positional only	867 proteins / 867 hits
IPR011050	STR	IPR011050	15	298	Merged direct domain	Pectin lyase fold/virulence factor	Central	Low	Positional only	572 proteins / 572 hits
IPR024535	ENZ	DC_0410	16	62	InterPro cluster	Rhamnogalacturonase A/B/Epimerase-like, pectate lyase domain	Central	High	Text match	420 proteins / 426 hits
IPR012334	STR	IPR012334	20	304	Merged direct domain	Pectin lyase fold	Central	Low	Positional only	867 proteins / 867 hits
IPR039448	ENZ	DC_0799	68	232	InterPro cluster	Right handed beta helix domain	C-terminal	High	Text match	178 proteins / 183 hits
IPR006626	Unmapped	-	110	148	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR006626	Unmapped	-	149	171	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR006626	Unmapped	-	183	205	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR006626	Unmapped	-	206	234	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR006626	Unmapped	-	245	275	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR006626	Unmapped	-	322	342	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR039448	ENZ	DC_0799	323	449	InterPro cluster	Right handed beta helix domain	C-terminal	High	Text match	178 proteins / 183 hits
IPR006626	Unmapped	-	343	365	InterPro	Parallel beta-helix repeat	-	-	-	-
DC_1312	RBD	DC_1312	357	576	Novel HMM	DC_1312	C-terminal	Low	Positional only	37 proteins / 37 hits
IPR006626	Unmapped	-	366	396	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR011050	STR	IPR011050	367	594	Merged direct domain	Pectin lyase fold/virulence factor	Central	Low	Positional only	572 proteins / 572 hits
IPR012334	STR	IPR012334	379	536	Merged direct domain	Pectin lyase fold	Central	Low	Positional only	867 proteins / 867 hits
IPR006626	Unmapped	-	397	418	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR006626	Unmapped	-	419	440	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR006626	Unmapped	-	472	494	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR006626	Unmapped	-	517	543	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR006626	Unmapped	-	544	570	InterPro	Parallel beta-helix repeat	-	-	-	-

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout

N-terminal

Central

C-terminal

APZ82339.1

1 601

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	27	27	0,9421
Central domain	28	590	564	0,9971
C-terminal	591	601	10	0,1992

Note: Constraints were applied during segmentation.
C-terminal too short, adjusted boundary

Legend: N-terminal Central domain C-terminal

3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring

N-terminal
1-27

Central
28-590

C-terminal
591-601

Taxonomy

	Name	Taxonomy ID	Lineage
Phage	Bacillus phage vB_BsuM-Goe2 [NCBI]	1933062	Uroviricota > Caudoviricetes > Herelleviridae > Okubovirus > Okubovirus camphawk
Host	Bacillus subtilis [NCBI]	1423	cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

No CDS data available.

Genome Context

Tertiary structure

PDB ID

58249e8479483d613b308d32516b6c1d3c47a268f81d9dddf8d6b78f515a36fe

ESMFold

Source ESMFold

Method ESMFold

Resolution 0,9153

Oligomeric State monomer

Download PDB

Model Confidence

Very high
pLDDT > 90

High
90 > pLDDT > 70

Low
70 > pLDDT > 50

Very low
pLDDT < 50

Protein

Domains

Domains [InterPro]

Domains [InterPro]

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

3D Structure with Domain Coloring

Domain Coloring

Taxonomy

Coding sequence (CDS)

Coding sequence (CDS)

Genome Context

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Model Confidence