Protein

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Genbank accession
YP_009277042.1 [GenBank]
Protein name
virion structural protein
RBP type
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,84
Protein sequence
MSTQVEDFINLQGTIQFRRGNRIQWTTVNPVLAAGELGVEVDTHQFKLGDGFTAWSDLPYGGLTGAKGPKGDTGDITPALQAAADAAIVASNNAANAASNAATSASSAVQSATTASTKAAEVQANADSAASNASSASTSATNAAASAASALASKNAAEAAATAVSGTAESITNALTQAADGQVDFWVAGAGFTAGVDTSLTLSRVPIRKNLITILFDGAQQQTDSWDISGKVVTFTNAIPDYVKRVQIAYGIPGSYFSQEVIDAGNAATAAKTAAQAAATDANTSKVAAQAARDAAWAAMTNGQGNVRNLYAYSNASIATFTADSVTLKDINGNFTTVTPSGALNCDITTSGPVAGGRDSVTPFSSNVWVHFFFIWGSGQSLGVIASPNRFTPTLPGAYTHWQYITSVKTISTTVLWPFNQHGSFVNINRYDGAAVISNGKATVATDVDCSGYLPPGINKAQFRFVLISDNNVDSTITAFAGPSGAETNGGFLNPVAALSTFANSTSRVFSAFNNREVVTSGQKLQYKLSVDPGGSGVSGLKIVVEGYRVPNGDAF
Physico‐chemical
properties
protein length:556 AA
molecular weight: 57027,19330 Da
isoelectric point:5,18368
aromaticity:0,08453
hydropathy:-0,00540

Domains

Domains [InterPro]
DC_0435
ATT
1–80
DC_0435 DC_0974
SSF69349
STR
15–99
SSF69349
IPR041352
ATT
15–52
IPR041352 DC_1656
YP_009277042.1
1 556
Architecture
ATT
STR
ATT
ATT 1-80 | STR 81-234 | ATT 258-538 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Ralstonia phage RSP15
[NCBI] 		1785960 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009277042.1 [NCBI]
Genbank nucleotide accession
NC_030948 [NCBI]
CDS location
range 70339 -> 72009
strand -
CDS
ATGTCAACACAAGTAGAAGATTTTATTAATCTACAGGGTACGATTCAATTCCGACGCGGGAATCGTATTCAGTGGACTACTGTGAATCCTGTTCTCGCTGCTGGTGAACTTGGTGTAGAGGTTGATACCCATCAATTTAAACTTGGTGACGGATTCACGGCATGGTCAGATTTGCCTTATGGGGGTCTGACTGGTGCCAAGGGGCCTAAGGGTGATACCGGTGATATCACCCCGGCTTTGCAGGCTGCTGCGGATGCTGCGATTGTGGCATCCAACAACGCTGCGAATGCGGCATCAAATGCAGCTACTTCCGCTTCATCTGCTGTTCAGAGTGCCACCACGGCATCTACAAAGGCTGCTGAAGTTCAGGCCAATGCTGATTCCGCTGCTTCAAACGCTTCTAGCGCGTCTACATCCGCAACAAACGCGGCTGCTAGTGCTGCTAGTGCTCTTGCCTCTAAAAACGCTGCTGAGGCTGCTGCAACGGCTGTTTCTGGGACTGCTGAGAGCATTACCAATGCCCTAACACAGGCTGCTGATGGTCAGGTTGATTTCTGGGTTGCTGGTGCTGGATTTACTGCGGGGGTTGATACATCTCTAACTCTATCGCGTGTGCCGATTAGAAAGAACCTGATTACGATTTTGTTTGACGGTGCGCAACAACAAACAGATTCATGGGATATCAGCGGAAAGGTGGTGACTTTCACTAACGCAATTCCTGATTATGTGAAACGTGTACAAATCGCCTATGGAATTCCCGGAAGCTATTTCTCACAAGAAGTTATCGATGCTGGTAATGCAGCTACAGCGGCTAAGACTGCTGCGCAGGCTGCTGCGACTGATGCCAACACCTCAAAGGTGGCCGCTCAGGCAGCACGTGACGCGGCTTGGGCTGCAATGACTAACGGTCAGGGAAATGTTAGAAATTTGTATGCCTATAGCAATGCATCAATTGCGACCTTTACAGCCGATAGCGTGACTCTGAAGGATATCAACGGCAATTTCACGACTGTCACCCCCTCAGGTGCATTGAATTGCGATATCACGACTTCAGGCCCCGTGGCAGGTGGTAGAGATTCGGTAACCCCATTCTCATCAAATGTTTGGGTTCATTTCTTCTTCATTTGGGGAAGTGGACAAAGTTTGGGGGTTATCGCTTCTCCAAATAGATTCACTCCCACTCTTCCGGGTGCATATACGCATTGGCAATACATCACATCTGTTAAAACCATTTCAACAACTGTGCTTTGGCCTTTCAATCAGCATGGTTCATTCGTGAACATCAACAGATATGACGGGGCTGCGGTGATTAGCAATGGTAAAGCTACAGTTGCAACAGATGTGGATTGTTCCGGTTATCTTCCTCCGGGAATTAATAAGGCTCAATTCAGATTTGTTCTGATTTCAGATAATAACGTTGATTCCACCATCACTGCATTTGCCGGTCCAAGCGGTGCAGAAACGAATGGGGGTTTCCTAAATCCGGTTGCCGCTCTGAGTACATTCGCAAACTCCACGTCTAGAGTCTTTTCGGCATTCAACAATCGTGAAGTTGTTACCTCTGGTCAGAAGCTTCAGTACAAATTGAGTGTTGATCCGGGTGGTTCTGGTGTTAGTGGTCTAAAGATTGTTGTTGAAGGTTATAGAGTCCCTAACGGTGACGCATTTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
651b18ee824285712649dd8ff8853518df51b9a7573bf9030b507445e4380423
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8295
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genome analysis of a phage RSP15 infecting the phytopathogen Ralstonia solanacearum Kawasaki,T., Fujie,M., Chatchawankanphanich,O., Ogata,H. and Yamada,T. 2010-03 — GenBank