Protein

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Genbank accession
YP_009879998.1 [GenBank]
Protein name
coil containing protein
RBP type
TSP
Evidence RBPdetect
Probability 0,74
Protein sequence
MSRTSIFSGPGSPTAETATYINTSYDNVKVVSDNIEDVLIVATAITNGDLDSVFDNIDSVILVAADITSVVAVADELPELLAVSGALPELQIIYDNMDALLLVYANLTMLQVIADNMELLEEVAANIPYSLKYLGAHIDPPTARLDGSDLEDGDYYFDSDASALVYYQLSDDSWFHVDPGEVLLARDETIALRDETIGLRDTTEGLKDTTEVLKDDASDYADKAEEEADRAESAASILVLASHAMTKAEFFANAEQRKRDNAGSGFLECGKHRSGRVPINQGLYNSSVPTLANSLYLGNGNLSEDTSSLSRTEYPLAVVDGVMHRIDQVAHTGLDYQRNVIKFPDAEQGTRSYDTATGEVIDYLTDVDPKYGDVASDLNEAVARNFEGSVKNGDFRFGDDGNWNVNENASISTDGILLYAVDDSVFSYATQTIVNSETEVEYEIEFYADVRLGAFSLAYRDNTTVYIAQDVTESGTHKYRFTIDAANPNAYIRFSRQTGYDTYDMSFTNISMRKVTNQPILSRQDYCFLETFHEVISDKGVVFPLGNVQYGANAYEGIPLQATNTLQGYSAFGEWDSETVGYSAVWANLTAEHQKVFLDDPDNNLYFDAGANELIQVRYRVRVIEGVGDNWENVSQGRYTGDGYMAYKTGFSYPNLVNPQGQQDITGGLGLSAGGVFDSIHTAQAHTQSPLIDGGYAIRNTSIPVGHNQLCFALPLCLVQRGNQGAYHPVYNSDGCAKFRSSTLVSQNNWYDNNAYQPTSKGECFNRGPSGFPVAIDTGYIGQPTGRSDQYEFYDAIYAGQVQDLCLNANKQDANRLLEDSIRKAVAGETRGVGKVPFSTVYDDAGSGGSSSADLLWAMNVNSDYLTMYADFSTKNVVSGDWCILYDATLEFALRMRMDVIGSTGDTIRRTNMTGTQGLDWEVLFGTFDITEATNGTGNEVYYILEKELTPEYDSLPWVDIIGSPENILATFPNGVIGQWIPQLPDGTSQKYSLNKKLASGNLVRIKKDSLDDTWDYLVVTFNESMNTTVVTSASDSIVLLHYETLSDFTEPDFNGVVYGDLGDVFAAQDYRVDVGSRLNSSLLNTVIVGDVRRFRTVSLLGSALESQAGHVHKGKLIMSAAYAPEHAPLEHLEPPVDGNTAFKSLYGLTVKDGLIYPIYWGRQLVYTIDNWGDDNTVPVNHSDYTMTDLNGVTVKAFCHIGKNPIGIADYTQTN
Physico‐chemical
properties
protein length:1215 AA
molecular weight: 133359,69000 Da
isoelectric point:4,34588
aromaticity:0,10206
hydropathy:-0,27284

Domains

Domains [InterPro]
DC_0265
STR
7–162
DC_0265 DC_1387
Coil
Unmapped
214–241
Coil
YP_009879998.1
1 1215
Architecture
STR
STR
STR 7-162 | STR 184-1215
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009879998.1
1 1215
Domain Start End Length (AA) Confidence
N-terminal 1 332 332 0,9708
Central domain 333 580 249 0,5604
C-terminal 581 1215 634 0,2578
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-332
Central
333-580
C-terminal
581-1215

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage 1.097.O._10N.286.49.B3
[NCBI] 		1881383 Uroviricota > Caudoviricetes > Schitoviridae > Dorisvirus > Dorisvirus 49B3
Host Vibrio sp.
[NCBI] 		678 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009879998.1 [NCBI]
Genbank nucleotide accession
NC_049431 [NCBI]
CDS location
range 8715 -> 12362
strand +
CDS
ATGAGTAGAACATCAATTTTTAGTGGCCCCGGTAGTCCTACCGCAGAGACAGCCACTTATATTAATACATCTTACGACAACGTTAAGGTGGTCTCTGACAACATAGAGGACGTACTTATAGTAGCTACAGCTATTACAAACGGAGATCTTGATTCAGTTTTTGACAACATAGATTCTGTGATACTTGTTGCTGCGGATATTACATCTGTAGTTGCAGTAGCGGATGAGCTACCTGAACTGTTAGCGGTATCTGGTGCATTACCTGAACTGCAAATAATATATGACAATATGGATGCCTTGCTTTTAGTGTATGCTAATTTAACTATGCTGCAGGTTATCGCAGATAATATGGAACTTCTTGAAGAAGTGGCAGCAAATATTCCTTACTCCCTTAAGTACTTGGGGGCACATATCGATCCTCCTACTGCACGACTGGATGGAAGTGACCTAGAAGACGGGGATTATTATTTTGACTCTGATGCTTCAGCATTAGTATATTACCAGTTATCAGATGACTCTTGGTTCCATGTTGATCCAGGTGAGGTTTTATTAGCTCGTGACGAGACTATTGCTTTACGTGATGAAACCATAGGGTTACGTGATACAACAGAAGGTCTGAAAGACACTACTGAAGTACTTAAGGATGATGCTAGCGATTACGCTGATAAAGCAGAAGAGGAGGCAGACAGGGCTGAGAGTGCTGCAAGTATTCTAGTACTAGCTAGTCATGCCATGACTAAAGCTGAGTTCTTTGCTAATGCAGAACAACGCAAACGTGACAATGCAGGTAGTGGATTCTTGGAGTGTGGGAAGCATCGGTCAGGGAGAGTACCAATCAACCAAGGCTTATATAATTCAAGCGTACCTACTCTAGCTAACAGTCTATATCTTGGTAATGGCAACCTGTCTGAGGATACAAGTTCATTATCACGAACAGAGTACCCTCTTGCAGTAGTAGATGGAGTGATGCATCGTATAGACCAAGTTGCTCATACAGGCTTAGACTATCAGCGTAATGTAATCAAATTCCCCGATGCAGAGCAGGGTACTCGTTCATACGATACAGCAACAGGTGAAGTAATTGATTACCTAACTGATGTTGACCCTAAATATGGTGATGTGGCTAGTGACTTGAATGAAGCGGTTGCAAGGAACTTTGAGGGTAGTGTTAAGAATGGTGATTTTAGGTTTGGTGATGATGGGAATTGGAACGTAAATGAAAATGCGTCAATATCCACAGATGGTATTTTATTATATGCCGTAGATGATTCGGTATTTTCATATGCTACCCAAACTATTGTAAATTCAGAAACAGAGGTTGAATATGAAATTGAATTCTATGCTGATGTACGTTTAGGTGCTTTTAGTCTTGCCTACAGAGATAATACAACAGTTTATATAGCTCAAGACGTAACAGAGTCGGGTACTCATAAATATAGATTTACTATAGATGCTGCTAACCCTAATGCGTATATACGTTTTAGTAGACAGACTGGGTATGATACATATGATATGTCATTTACTAATATCTCTATGCGCAAAGTAACCAACCAACCAATTCTCTCTCGTCAAGATTACTGTTTCTTAGAAACATTTCATGAAGTAATTTCTGACAAAGGTGTAGTGTTCCCATTGGGTAACGTACAGTATGGCGCAAATGCTTATGAAGGTATTCCACTACAAGCAACCAATACGCTACAAGGTTACTCAGCCTTTGGTGAGTGGGATAGTGAAACAGTTGGTTATTCTGCTGTATGGGCTAACTTAACTGCTGAACATCAAAAAGTATTCTTAGATGATCCCGATAACAACTTGTACTTTGATGCAGGAGCTAATGAGTTAATTCAGGTTCGTTATCGTGTACGTGTTATTGAGGGTGTTGGTGATAATTGGGAGAATGTGTCGCAAGGTCGCTATACAGGTGACGGGTACATGGCATATAAAACTGGCTTTTCATACCCAAACCTAGTTAATCCACAAGGTCAGCAGGACATTACAGGAGGGTTGGGACTGTCTGCAGGTGGGGTATTTGATAGTATACACACGGCACAGGCACATACACAATCCCCTTTAATAGATGGGGGATATGCTATTCGAAACACATCTATACCTGTTGGGCATAATCAACTTTGCTTCGCTCTACCCCTCTGTCTTGTACAACGTGGAAACCAAGGTGCATACCACCCTGTTTATAATTCTGATGGTTGTGCAAAATTCCGTTCATCTACGCTAGTTTCACAAAATAATTGGTATGATAATAACGCATATCAACCAACCTCGAAGGGTGAGTGTTTCAATAGAGGTCCTTCTGGTTTTCCCGTTGCAATAGATACGGGTTATATAGGACAACCCACAGGTCGCTCAGACCAGTATGAGTTCTATGATGCAATCTACGCAGGACAGGTACAAGACCTATGTCTAAATGCTAATAAGCAAGATGCTAATCGTTTACTAGAAGATAGTATTCGTAAAGCTGTTGCAGGGGAAACTCGCGGTGTTGGTAAGGTTCCTTTCTCCACTGTGTACGATGATGCAGGGAGTGGTGGTAGTAGTAGTGCAGATCTACTCTGGGCTATGAATGTAAACAGTGACTACCTGACTATGTACGCGGATTTCTCAACCAAGAATGTGGTAAGTGGGGACTGGTGCATTTTATACGATGCAACACTAGAGTTCGCATTAAGGATGCGTATGGATGTAATAGGGTCTACAGGAGATACAATTCGACGTACCAATATGACAGGTACTCAAGGATTGGACTGGGAGGTGTTGTTTGGTACATTCGACATTACGGAGGCAACTAACGGTACAGGTAACGAAGTCTACTACATTCTTGAGAAGGAACTCACTCCTGAATACGATTCTCTACCTTGGGTAGATATCATTGGTTCACCTGAAAATATCCTAGCTACGTTCCCTAATGGTGTTATTGGGCAGTGGATTCCTCAGTTACCTGACGGTACTTCTCAAAAGTATAGTCTTAATAAGAAACTTGCATCAGGTAACTTAGTGCGTATTAAAAAAGACTCACTTGATGATACTTGGGATTATCTGGTAGTAACTTTCAATGAATCCATGAATACGACTGTCGTGACCTCTGCTTCTGACTCCATAGTGTTACTCCATTACGAAACACTCTCTGATTTCACCGAACCAGATTTTAATGGCGTGGTTTATGGTGATTTAGGTGATGTATTTGCAGCTCAAGACTACCGTGTTGATGTGGGCAGTAGGCTAAATAGCTCATTATTAAACACTGTGATTGTTGGAGATGTCCGTAGATTCAGAACAGTGAGTCTTCTAGGGAGTGCTCTTGAATCGCAAGCAGGTCATGTACATAAAGGTAAGCTAATTATGTCTGCAGCATATGCACCTGAACATGCACCTTTAGAACACTTAGAACCCCCAGTAGATGGAAACACTGCATTTAAATCCCTGTACGGGTTAACGGTTAAAGATGGGCTTATCTATCCTATATATTGGGGTAGACAGCTTGTGTATACTATTGATAATTGGGGAGATGATAATACAGTGCCTGTAAATCATAGCGATTACACCATGACTGACTTGAATGGTGTTACTGTTAAGGCATTCTGCCATATAGGAAAGAACCCTATTGGTATTGCTGATTACACCCAAACTAACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
3cba50f24531b6245027617d16e5ead27de64b823dce6e091aa450edf272e72e
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,3640
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A major lineage of nontailed dsDNA viruses as unrecognized killers of marine bacteria Kauffman,K.M., Hussain,F.A., Yang,J., Arevalo,P., Brown,J.M., Chang,W.K., VanInsberghe,D., Elsherbini,J., Cutler,M.B., Kelly,L. and Polz,M.F. 2018-01-24 — GenBank