Protein

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Genbank accession
AFE87036.1 [GenBank]
Protein name
neck passage structure protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,90
Protein sequence
MSLDNFKNRTIIWDTVNKDFPQPIQIMQGDVNARTLSVKIIDNGGEIDLTGHSLKLTYQYTNSSNSGFVMIPPENLTKGEFILVIPTEMTETGVIEANLILLNEDKEQVIVSKNLTFISDNSTVSDLAQEVNNNIDDFTKLLLENMPQVMRSELNDLHIKTDSNTSNIERKANLADVTNLRNTVNSQGIEISTLENKVSALSSGVPKEVSLVSSMTDKTKNYVYTGTEPGYTPGNWYYWNGTIWAPGGTYQATAIDLDVDGIRSFTPSKTTGAINPFNGTITTTEGVVYYTVDVSNGAEKLTFYSESFGSNYGYAFYNGSGAFIPGTGQLEKFEGYQTIDVPVSATTFRVTSRLETNQNVTLFKANSSVQKNAKNINDNFVKSYGNKKLLKSKDYQHAPLLISSTTGRWVKVNNSSAVLIPISDVGKAVKIMSNALNSSSYTFLKTATGNSGDLADFATSYKGIKKLSVGEYATLQVPSDAGFLYVTNSFDDGSIHDVYPKVTPMLDTIVTVAASNSSALDKSRADYVATGANDQDVINQAITSLVYGGTIKLFDGDYNIDAFGDTKTAIYFPNNGYARTINFEGSTENKSFLSENGVTIHVTKTAFDSLPTTGDYNVFAGDGTTLPIGVWQGFANNVNFKNFYLKLYTSQRQMVGINGQNFGSMYIEQVGVYSESYFTDRFNRYKPVTPVINSIGIISVGGANDEMARIGMDTVNVGGLGTGIIIARAEHLIVKNSTVSRSVIGYKFSGNADKPLTLINNADEGNTHLPVFEGTGLITSIDFSIERLDPGVFPNDPSGDTNPLAKELTPGGWKGTFDFNIQGSGAGINHFWQSGSGRNIKTKKISSAISGTVNPSNPEYLQEFFRTDLNKKLTFNGNSWVDSIGNIV
Physico‐chemical
properties
protein length:888 AA
molecular weight: 96653,64070 Da
isoelectric point:5,10019
aromaticity:0,09910
hydropathy:-0,27387

Domains

Domains [InterPro]
G3DSA:2.60.40.3350
ATT
10–126
G3DSA:2.60.40.3350 DC_0775
IPR018913
ATT
10–147
IPR018913
IPR018913
ATT
25–147
IPR018913
AFE87036.1
1 888
Architecture
ATT
STR
ATT 10-147 | STR 148-888
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AFE87036.1
1 888
Domain Start End Length (AA) Confidence
N-terminal 1 418 418 0,8409
Central domain 419 837 420 0,8890
C-terminal 838 888 50 0,9473
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-418
Central
419-837
C-terminal
838-888

Taxonomy

  Name Taxonomy ID Lineage
Phage Lactococcus phage ASCC310
[NCBI] 		1165139 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Lactococcus lactis
[NCBI] 		1358 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Lactobacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AFE87036.1 [NCBI]
Genbank nucleotide accession
JQ740792 [NCBI]
CDS location
range 7241 -> 9907
strand +
CDS
ATGAGTTTAGATAATTTTAAAAATAGAACGATTATATGGGATACGGTCAATAAAGACTTCCCACAACCAATTCAAATAATGCAAGGCGACGTCAACGCTAGAACATTGTCAGTTAAAATAATTGATAATGGAGGCGAAATTGATTTGACTGGTCATTCATTAAAACTTACATATCAATATACTAATAGCAGTAATTCAGGTTTTGTTATGATTCCTCCTGAAAACTTAACTAAGGGAGAGTTTATTTTAGTAATTCCTACCGAAATGACAGAAACTGGAGTTATTGAAGCGAACTTAATACTTCTCAATGAAGATAAAGAGCAGGTTATCGTCAGCAAGAACCTTACGTTTATATCAGATAATTCGACAGTTTCTGATTTAGCTCAAGAAGTAAATAATAATATTGATGATTTTACAAAATTATTATTGGAAAATATGCCACAAGTAATGCGTAGTGAGTTGAATGATTTACATATTAAAACTGATTCAAATACGAGCAATATTGAGCGTAAAGCAAATTTAGCTGATGTGACTAACTTACGAAATACCGTTAACAGTCAAGGTATTGAAATTTCAACGCTTGAAAATAAAGTATCCGCTCTTTCGAGTGGCGTACCAAAGGAAGTTTCTCTAGTTTCTAGTATGACCGATAAAACCAAAAATTATGTTTATACTGGTACTGAACCTGGATACACTCCTGGAAATTGGTACTACTGGAATGGTACAATTTGGGCACCAGGAGGTACATATCAAGCCACTGCGATTGATTTAGATGTTGATGGAATTCGGAGCTTCACTCCATCTAAAACTACTGGGGCTATTAACCCATTCAATGGAACAATTACAACAACGGAAGGTGTCGTCTATTACACGGTGGATGTTTCAAACGGGGCTGAAAAATTGACTTTTTACTCAGAAAGTTTTGGATCGAACTATGGATACGCATTTTATAACGGCAGTGGGGCGTTCATTCCCGGTACCGGACAGTTAGAAAAGTTTGAGGGCTATCAAACGATTGACGTTCCTGTTTCAGCCACTACATTCAGAGTTACGAGTCGACTTGAAACTAACCAAAATGTGACGCTATTTAAAGCTAATTCTTCAGTTCAAAAAAATGCTAAAAATATTAATGATAATTTTGTGAAAAGTTATGGTAACAAAAAATTACTAAAATCAAAAGACTATCAGCATGCCCCATTGCTAATTTCTTCAACAACGGGTAGATGGGTGAAAGTAAACAATTCAAGCGCAGTGCTTATTCCAATTTCAGATGTTGGGAAAGCTGTGAAAATCATGTCAAACGCGTTAAATTCGTCATCTTACACTTTTTTGAAAACTGCAACTGGAAATTCTGGTGATCTTGCTGACTTTGCGACCAGTTATAAGGGCATCAAGAAGTTAAGTGTTGGCGAATATGCCACATTGCAAGTACCAAGTGATGCCGGTTTCTTGTATGTTACAAATAGTTTTGATGACGGCTCAATCCATGATGTCTACCCCAAAGTTACACCAATGTTAGACACCATTGTTACGGTCGCTGCCTCAAACTCATCGGCGCTGGATAAGTCAAGAGCTGACTATGTGGCGACCGGTGCGAATGACCAAGACGTGATTAATCAAGCAATTACATCCTTGGTATATGGTGGAACTATTAAATTATTTGATGGAGATTACAACATAGATGCATTTGGCGACACAAAAACTGCTATTTATTTCCCTAACAATGGCTATGCACGAACCATCAACTTTGAAGGCTCAACTGAAAACAAGAGCTTCCTTTCAGAAAATGGGGTCACCATTCATGTTACTAAGACGGCGTTCGACAGTTTGCCAACGACTGGCGACTACAATGTGTTTGCTGGCGACGGCACTACACTTCCAATCGGTGTTTGGCAAGGATTTGCTAATAATGTTAATTTCAAGAATTTCTATCTGAAATTGTACACCTCCCAACGGCAGATGGTTGGAATTAATGGTCAAAACTTCGGATCAATGTACATCGAACAAGTTGGTGTCTATTCCGAAAGTTATTTCACTGATCGCTTCAATCGCTATAAGCCAGTTACCCCTGTTATTAATTCAATCGGCATCATCTCTGTCGGTGGCGCAAACGATGAGATGGCACGAATTGGAATGGACACGGTGAATGTTGGTGGTCTTGGTACAGGTATCATCATCGCACGAGCTGAGCATTTGATTGTTAAGAATTCAACAGTATCACGCTCTGTGATTGGCTATAAATTCTCCGGCAATGCTGATAAGCCGTTAACATTGATTAATAATGCTGACGAAGGCAACACGCATTTGCCAGTATTTGAGGGTACTGGATTAATCACATCAATTGACTTTTCAATCGAGCGACTTGATCCAGGAGTGTTCCCCAATGATCCTTCTGGTGATACTAATCCATTAGCCAAAGAGTTAACTCCTGGCGGTTGGAAAGGGACGTTTGATTTTAATATTCAAGGTTCGGGGGCTGGAATTAATCACTTTTGGCAGTCTGGCAGTGGACGCAACATTAAAACTAAAAAAATTAGTTCGGCAATTTCTGGCACGGTTAATCCATCTAATCCGGAATATTTACAAGAATTCTTTAGAACAGATTTGAACAAGAAACTAACATTCAATGGGAATAGTTGGGTTGATTCAATTGGTAATATAGTTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
47d7a8859f14a39dfd230802e73329b1a206d9361f6c6c481d87fa7b7f1ca1ee
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7017
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50