Protein

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Genbank accession
QPL22248.1 [GenBank]
Protein name
neck passage structure
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,93
Protein sequence
MSLDNFRNRAIVWDTVNKDFPQPIQIMQGDVNARTLSVKIIDNGGEIDLTGHSLKLTYQYTNSSNSGFVMIPPENLTKGEFLLVIPTEMTKAGVIEANLILLNEDKEQVIVSKNLTFISDNSTVTDLAQEVNNKIDDFTKLLLENMPQVMRSELNDLHAQTESNTSNIELKANQTDLNNLQTIVNNQGITISTAAQETEVRSLISLLDNVKQTKKVARINLLLEQYKTSGYYRQYTNGEKLVNTDYDLFDMVPVNADTDYFTGISPNAHIAFYDFEQKYISGLLKPQPNFAIPSSYLNTLVVKVPTNAKYMSYACKKNATQSVFYENYNPILDTSQSIFEGLLPFEQIANHPRGLKKVSNQNMFNKKIVVSGRYLDSANGGLPHNANYNVYFMKVKPNTNYTTSGFVNNHDAFYDISGKFISSGNKSGTITTPANAFFWGISLTNTELPGAVICEGNVAKYSDFGTGAIFEVVDTAPQTLNVGADKKFTTIQAAVNFAKDGDTILISSGTYHEAVDAKTKLLHFKGVDKNTVTLEYENGAYSLPPLEMSKGSVENMTIHAISQAQVSGEPGKAYCFHADYDIQIGHTLSFTNVKFINDDKQVIGVGLRNNFTIEFNSCDFVTPSGDNAFYVHDDPIRDNSSNQNLIVKDCSIVNNGTGATIHMQSQERVGAVAKVTWQRNIVVNLSGGKLIDVATYNNGLAKDKWLGSSDFVLQPTSAMNNIAQLNFN
Physico‐chemical
properties
protein length:728 AA
molecular weight: 80510,50120 Da
isoelectric point:5,35539
aromaticity:0,09203
hydropathy:-0,29231

Domains

Domains [InterPro]
IPR018913
ATT
10–147
IPR018913 DC_0775
G3DSA:2.60.40.3350
ATT
11–125
G3DSA:2.60.40.3350 IPR011050
IPR018913
ATT
25–147
IPR018913 IPR012334
QPL22248.1
1 728
Architecture
ATT
STR
ATT 10-147 | STR 148-726 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QPL22248.1
1 728
Domain Start End Length (AA) Confidence
N-terminal 1 264 264 0,9622
Central domain 265 717 454 0,6030
C-terminal 718 728 10 0,2954
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-264
Central
265-717
C-terminal
718-728

Taxonomy

  Name Taxonomy ID Lineage
Phage Lactococcus phage GP14
[NCBI] 		2777329 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Lactococcus cremoris
[NCBI] 		1359 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Lactobacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QPL22248.1 [NCBI]
Genbank nucleotide accession
MW041634 [NCBI]
CDS location
range 6862 -> 9048
strand +
CDS
ATGAGTTTAGATAATTTTAGAAATAGAGCGATTGTATGGGATACGGTCAATAAAGACTTCCCACAACCAATTCAAATAATGCAAGGCGACGTCAACGCTAGAACATTGTCAGTTAAAATAATTGATAATGGAGGCGAAATTGATTTGACTGGTCATTCATTAAAACTTACATATCAATATACTAATAGCAGTAATTCAGGTTTTGTTATGATTCCTCCTGAAAACTTAACTAAAGGAGAGTTTCTTTTAGTAATTCCTACCGAAATGACAAAAGCTGGAGTTATTGAAGCGAACTTGATTCTTCTCAATGAAGATAAAGAACAAGTTATTGTCAGTAAGAATTTAACATTTATATCAGATAATTCTACGGTTACAGATTTAGCTCAAGAAGTAAATAATAAGATTGATGATTTTACAAAATTATTATTGGAAAATATGCCACAAGTAATGCGCAGTGAGTTGAATGATTTACATGCTCAAACTGAATCAAATACGAGCAATATTGAGCTTAAAGCTAATCAAACGGATTTAAATAACTTACAAACTATTGTTAATAATCAAGGTATTACAATTTCCACAGCTGCTCAAGAAACAGAAGTACGTTCGCTGATTTCGCTTTTAGATAATGTAAAGCAAACGAAGAAAGTAGCACGTATCAATTTATTATTAGAACAATATAAAACAAGTGGATATTATCGTCAATACACAAATGGCGAAAAATTGGTTAATACTGACTATGACCTTTTCGACATGGTGCCAGTAAATGCTGATACTGACTACTTTACGGGTATTTCGCCAAATGCACATATTGCATTTTATGACTTTGAACAAAAATATATTTCTGGACTTCTAAAGCCTCAGCCTAACTTTGCAATACCTTCTTCATATTTAAATACATTAGTTGTAAAGGTTCCGACGAATGCTAAGTACATGTCTTATGCGTGCAAAAAAAATGCAACTCAATCAGTTTTTTACGAAAACTATAATCCTATTTTAGACACTTCTCAGTCAATTTTTGAAGGTTTACTACCATTTGAGCAAATCGCAAACCATCCGCGTGGTCTTAAAAAAGTGAGTAATCAAAATATGTTTAACAAAAAAATAGTTGTATCTGGAAGATACTTAGATTCAGCAAATGGTGGACTACCTCATAATGCTAATTATAATGTTTATTTTATGAAAGTAAAACCAAACACAAATTATACAACAAGTGGATTTGTTAATAACCATGATGCCTTTTATGATATATCAGGTAAATTCATTTCATCTGGAAACAAAAGCGGAACAATTACAACACCAGCGAATGCTTTCTTTTGGGGTATATCATTGACTAATACGGAATTGCCTGGGGCTGTTATCTGCGAGGGTAATGTTGCTAAATATAGTGATTTTGGCACAGGTGCCATATTTGAAGTTGTGGACACCGCCCCTCAAACTTTAAATGTTGGAGCTGATAAAAAATTTACTACCATTCAAGCTGCGGTTAATTTTGCAAAAGACGGTGATACTATCCTGATTTCTTCCGGAACTTATCATGAAGCAGTAGACGCCAAGACTAAGCTATTGCATTTTAAGGGTGTTGATAAAAATACGGTAACCCTAGAATACGAAAACGGAGCATACTCGTTGCCACCTTTGGAAATGTCTAAAGGAAGTGTTGAAAATATGACTATCCATGCAATCAGCCAAGCACAAGTTTCCGGAGAGCCTGGGAAAGCATATTGTTTCCACGCTGACTACGACATTCAAATTGGGCATACCTTGTCTTTTACAAATGTAAAATTCATTAATGATGATAAGCAAGTCATTGGCGTTGGATTGAGAAATAACTTTACTATTGAATTTAATAGTTGTGATTTTGTTACACCGTCCGGAGACAATGCTTTTTATGTACATGATGACCCAATCCGTGACAATTCAAGTAATCAGAATTTGATCGTTAAAGACTGCTCAATCGTTAATAATGGAACTGGTGCGACTATCCACATGCAATCGCAAGAACGTGTCGGGGCAGTTGCTAAGGTAACGTGGCAGCGCAATATTGTTGTTAATTTGTCAGGTGGTAAATTAATCGACGTGGCAACTTATAACAATGGTTTAGCAAAAGACAAATGGCTCGGCTCGTCTGACTTCGTGCTACAACCAACTTCTGCGATGAATAATATTGCTCAATTAAATTTTAATTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
87f264e88d9a972f2d0f05cd93278c6c688dee8b03c805f149ee8fef14de680a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6972
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genome Sequences of 10 Lactococcal Skunavirus Isolated from the Same Canadian Cheddar Cheese Plant Dore,L., Perrault-Jolicoeur,A., Labrie,S., Rousseau,G., Tremblay,D. and Moineau,S. 2015 — GenBank