Protein

View in Explore
Genbank accession
CDL65232.1 [GenBank]
Protein name
tail tubular protein B
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MGKVTGSYASVTRGVSEQVPQDRHPGQHFEQVNMVSDPVKGLVRRHGSVTMDERAVAGMSPAPNLTPTQQAYARNYREYSFFVNGTEYSIVYMSRERNSGDTLPFCFVLNKTTGKFLNVAYVDPGNLQDWIFGGISAITTVGKYVVMASNRIGPGYSVDDQYARSSQQWVATVRGGAYSRTYRLTVRRASDGVQFVASYTTMASSYPNLLNTGDIPLDGNPNYQKQVNDRVNDYNSRVNQWIGDAARSITPEFIASQLSASLAAQGFTNQYAIGGTVIGDNTSAVSADDGGDGSMFRAVYNEVDDPSKLSPIHAANKVVRIRPKGSPDPYYMIAVPDNPATGGWQTVTWKETAAQIVKPGQVFAIGAISNDGTTFWLGSNPAALQGVIGGSVPGYAASKCGDLNAEGAVPYFFGRRVTLLTVFMDRLVIVANGTIFMSRVGDYFNFFRKSMLTVNDDDPIEVYALGAEDDIISKCVTYNKDLFMFGQRKQYSISGRTVLTPKSASVSTAANEQDAMYAQPVVVGNLLYYGKYEDARNQSGPSPYAGRINQFQLGLFQDTPETYCVSQQLSRYIRGRPIEFAVLSAPSCLVVRTDGHDNGVYVYSFIDQPGTQARVFDSWSRWQWSPNVGRIIAITSYQASIYAFVLRYDGSSVFVACEQFVMDSDLSVNPHLDAQRPASKFAADQGYINKRNVAVISDGATALANTVERAWLGESNRSFTDFWNRLNAVERDAAWTGIAFDSYVELTPPFVRDSNDKALINGRLVVGRYTVSVNDTGGMDVWLNSLGDSKQVFAFNGRRVGLSNNQVGRQPITSAALQIPAGRANVEHTLSLHSRKWLPMALTAIEWVGQLFLNSRRV
Physico‐chemical
properties
protein length:858 AA
molecular weight: 94193,43810 Da
isoelectric point:7,99816
aromaticity:0,10956
hydropathy:-0,24499

Domains

Domains [InterPro]
IPR058003
TTP
1–55
IPR058003 IPR058003
DC_0058
STR
1–858
DC_0058
CDL65232.1
1 858
Architecture
STR
STR 1-858
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
CDL65232.1
1 858
Domain Start End Length (AA) Confidence
N-terminal 1 200 200 0,9190
Central domain 201 399 200 0,2092
C-terminal 400 858 458 0,1194
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-200
Central
201-399
C-terminal
400-858

Taxonomy

  Name Taxonomy ID Lineage
Phage Burkholderia phage Bp-AMP3
[NCBI] 		1673729 Uroviricota > Caudoviricetes > Autographivirales > Ampunavirus > Ampunavirus BpAMP1
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
CDL65232.1 [NCBI]
Genbank nucleotide accession
HG796220 [NCBI]
CDS location
range 28514 -> 31090
strand +
CDS
ATGGGTAAGGTAACAGGCAGCTACGCCAGCGTCACGCGTGGCGTCAGCGAGCAAGTGCCGCAGGACCGGCATCCCGGTCAGCACTTTGAGCAAGTCAACATGGTGTCCGATCCCGTCAAGGGACTCGTACGCCGCCACGGTTCGGTCACGATGGATGAGCGGGCCGTCGCGGGTATGTCGCCCGCACCGAACCTCACGCCAACGCAGCAAGCGTACGCACGGAACTACCGCGAGTACAGCTTCTTCGTGAACGGCACCGAGTACAGCATCGTCTACATGAGCCGCGAGCGCAACAGCGGCGACACGTTGCCGTTCTGCTTCGTGCTCAATAAGACGACCGGCAAGTTCCTCAACGTCGCGTACGTGGACCCCGGCAACCTGCAAGACTGGATTTTCGGCGGCATCAGCGCGATCACGACGGTTGGCAAGTATGTCGTCATGGCATCGAACCGCATCGGCCCCGGCTACAGCGTCGATGACCAGTACGCACGCAGCAGCCAGCAGTGGGTCGCCACGGTGCGCGGCGGGGCATACAGCCGCACGTACCGCCTCACGGTGCGCCGTGCGTCGGATGGTGTGCAGTTCGTTGCCTCGTACACGACGATGGCTTCGAGCTATCCGAACCTGCTGAACACTGGCGACATCCCGCTCGACGGGAACCCGAACTACCAGAAGCAGGTGAACGACCGGGTGAACGACTATAACTCGCGGGTCAACCAGTGGATCGGTGACGCGGCGCGCTCGATCACTCCCGAGTTCATCGCTTCGCAGCTTTCGGCCTCGCTGGCGGCGCAGGGCTTCACCAATCAGTACGCCATCGGCGGGACAGTAATTGGCGACAACACTTCGGCTGTCTCGGCGGACGACGGCGGCGATGGCTCGATGTTCCGCGCCGTGTACAACGAGGTGGACGATCCCTCGAAGCTCTCGCCAATCCACGCAGCGAATAAGGTGGTGCGGATTCGACCGAAGGGGTCGCCCGACCCGTACTACATGATCGCCGTACCGGACAACCCCGCGACAGGCGGATGGCAGACGGTGACGTGGAAGGAGACAGCCGCGCAGATCGTGAAGCCGGGGCAGGTGTTCGCCATCGGCGCGATCTCCAACGACGGCACGACCTTTTGGCTCGGTAGCAACCCCGCAGCGTTGCAGGGCGTCATCGGCGGGTCCGTTCCCGGCTACGCGGCAAGCAAATGCGGCGACCTCAACGCGGAGGGCGCAGTGCCGTACTTCTTCGGTCGGCGCGTAACGCTGCTCACCGTCTTCATGGACCGCCTCGTGATCGTTGCGAACGGCACGATCTTCATGTCGCGTGTCGGTGACTACTTCAACTTCTTCCGTAAGTCGATGCTCACCGTCAACGATGACGACCCGATTGAGGTGTACGCGCTCGGGGCCGAGGACGACATCATCAGCAAGTGCGTCACGTACAACAAAGACCTGTTCATGTTCGGCCAGCGGAAGCAGTATTCGATCAGCGGGCGCACCGTGCTCACGCCGAAGTCCGCGTCGGTCTCGACAGCAGCCAACGAGCAGGACGCGATGTACGCACAGCCGGTCGTGGTCGGCAACCTGCTCTACTACGGCAAGTACGAAGACGCCCGCAACCAGTCGGGGCCGTCGCCGTACGCGGGGCGCATCAACCAGTTCCAGCTTGGCCTGTTCCAAGACACGCCCGAGACATACTGCGTGTCGCAGCAGTTGAGCCGGTACATCCGTGGCAGGCCCATCGAGTTCGCTGTGCTCTCTGCGCCCTCGTGCCTAGTTGTGCGGACGGACGGCCACGACAACGGCGTGTACGTGTACAGCTTCATCGACCAGCCGGGTACGCAAGCGCGAGTGTTCGATTCGTGGTCCCGGTGGCAGTGGTCCCCGAACGTCGGGCGGATCATCGCCATCACCTCGTACCAAGCGTCCATCTACGCTTTCGTGCTCCGGTATGACGGCAGCAGCGTGTTCGTCGCGTGCGAGCAGTTCGTCATGGACTCCGACCTCTCGGTGAACCCTCACCTCGACGCTCAACGTCCAGCATCGAAGTTCGCGGCGGATCAGGGCTACATCAATAAGCGCAACGTCGCCGTGATCTCCGATGGCGCGACCGCGCTGGCGAACACCGTCGAGCGTGCGTGGCTCGGTGAGTCGAATCGCAGCTTCACCGATTTCTGGAACCGGCTGAACGCCGTAGAGCGCGACGCAGCGTGGACCGGAATCGCGTTCGACTCGTACGTTGAACTCACCCCACCGTTCGTCCGCGACTCTAACGACAAGGCGCTCATCAACGGGCGGCTCGTCGTCGGACGGTACACCGTCAGCGTGAACGATACAGGCGGTATGGACGTGTGGTTGAACTCGCTCGGTGACTCGAAGCAGGTGTTCGCCTTCAATGGTCGCCGCGTGGGCCTGAGCAACAACCAAGTGGGGCGTCAGCCGATCACCTCGGCAGCGCTTCAGATTCCAGCGGGCCGTGCCAACGTAGAGCACACGCTTTCCCTTCACTCGCGTAAGTGGTTGCCGATGGCCCTCACCGCAATCGAGTGGGTCGGCCAGTTGTTCCTTAACTCTCGGAGGGTCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
92016f85849575e50aa09bede73ffef0df6f8d93015e7aac45aee78a93b1807a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8517
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Novel phages display a temperature dependent lifestyle choice that underpins the population dynamics of a tropical bacterial pathogen Shan,J., Korbrisate,S., Adler-Lazer,N., Clokie,M. and Galyov,E. 2014-11-14 — GenBank