Protein

View in Explore
Genbank accession
WYC17695.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,87
Protein sequence
MGFFAGKYSDGKTVLSLNTESGGDINRHYSPNANSIFHSDMPFVLVDGTYEAGLGNAGNGFFVCQMPSDIINIKSNDPGRVILTAIEINGTHRAFLNGTQSQVGQFTAFFEDPPIGRAGAEVGLTSAFASGNSLAHGTYIYNSGLGHEESIARQGTGGTISQASGFNLYRPGGAYAGEAIGRAWTLAGFPAGASTVPIDGGNADYWHPNWQAPIGAAYRGHNWFYVCNSNIRGYVGKKGTVPANVNLLYQSPTYPDKVYICKGSTSNLAAQAAKKVYVQDGYNITPTKVIWYVLNLRYSNGNMGVSGNPFTGSDILITPSNFTIKGVSLPNTGYKFINQNAFGNLGYRPDMEYIGNNAAYTGAFGDTTARCEIVGSSNGSLWSPVDYGGAKSQISIYKFGAGKQWYVNSSNNTIGNEHGAVWSPSTVPLRLFPNNVASTYVGDDITPAYPGAGNYYMALATIGLGLPNANATVILTTEVIMGNINTAGGAIRTYGGTAWQVQGRRQHSYTEGDGIFHQILTLPPGYLVPYHSTTAYSYTQTWASRPDELTFRRNGYIYTIKNLGNGNAELGVIIHADEAAAIFLPRLRVTVQRLT
Physico‐chemical
properties
protein length:595 AA
molecular weight: 63711,26060 Da
isoelectric point:8,12123
aromaticity:0,11933
hydropathy:-0,20286

Domains

Domains [InterPro]
IPR059609
RBD
1–595
IPR059609
WYC17695.1
1 595
Architecture
RBD
RBD 1-595
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WYC17695.1
1 595
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,1151
Central domain 11 209 200 0,6258
C-terminal 210 595 385 0,8686
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-209
C-terminal
210-595

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage vB_SpuM_X5
[NCBI] 		3135593 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella pullorum
[NCBI] 		605 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WYC17695.1 [NCBI]
Genbank nucleotide accession
PP502935 [NCBI]
CDS location
range 105528 -> 107315
strand -
CDS
ATGGGTTTTTTCGCTGGAAAATATAGCGATGGTAAGACCGTACTATCTTTAAATACTGAATCTGGTGGTGACATTAATCGTCATTATAGTCCAAATGCCAATAGTATTTTTCATAGTGATATGCCATTTGTCCTAGTTGATGGTACTTATGAGGCTGGGTTAGGAAATGCTGGAAATGGGTTTTTTGTATGTCAGATGCCATCTGACATAATAAATATTAAATCCAATGACCCAGGTAGAGTTATACTAACTGCTATTGAGATTAATGGTACTCATAGGGCTTTTCTTAATGGTACTCAATCTCAAGTTGGTCAATTTACTGCATTTTTTGAAGATCCGCCTATTGGTAGGGCAGGTGCAGAAGTAGGTCTTACGTCAGCTTTTGCATCAGGTAACAGCTTAGCACATGGCACCTATATCTATAACTCTGGTTTAGGCCATGAAGAGTCAATTGCTAGACAGGGTACAGGTGGTACCATATCTCAAGCTTCTGGGTTTAATTTATATAGGCCGGGAGGAGCATATGCTGGTGAGGCTATAGGTAGGGCATGGACTTTAGCAGGATTTCCAGCAGGAGCATCTACAGTACCTATAGATGGTGGTAATGCTGACTACTGGCACCCTAATTGGCAAGCTCCTATAGGAGCCGCCTATAGAGGACATAATTGGTTCTACGTTTGTAACTCTAATATACGAGGTTATGTAGGTAAAAAGGGCACAGTACCGGCTAATGTTAACTTATTGTATCAATCTCCTACTTACCCTGATAAGGTTTATATATGCAAAGGTTCAACATCTAATCTAGCAGCACAGGCCGCTAAGAAAGTATATGTGCAGGATGGATATAATATTACACCTACCAAAGTTATTTGGTATGTACTTAATTTGAGGTATTCTAATGGTAATATGGGTGTATCTGGTAACCCATTTACTGGGTCAGATATACTTATAACTCCATCTAATTTTACTATAAAAGGGGTTAGTTTACCAAATACTGGATATAAGTTTATTAACCAAAATGCTTTTGGTAACTTAGGCTATAGGCCAGATATGGAGTACATTGGAAATAACGCAGCATACACTGGAGCCTTTGGAGATACCACTGCGCGTTGTGAAATTGTAGGCTCTAGTAATGGATCTTTATGGTCTCCTGTAGATTATGGAGGGGCTAAGTCTCAAATTAGTATTTACAAATTCGGAGCAGGTAAGCAATGGTACGTAAACTCAAGTAATAACACTATAGGTAATGAGCACGGAGCTGTGTGGAGTCCTAGTACTGTACCCTTAAGACTATTTCCTAATAATGTTGCTAGTACCTATGTTGGTGATGATATAACCCCCGCATATCCTGGAGCAGGCAACTATTATATGGCTCTAGCTACCATAGGACTAGGATTACCTAATGCTAACGCAACGGTAATATTAACTACGGAAGTTATTATGGGTAATATTAATACGGCTGGAGGAGCCATACGCACATACGGTGGTACTGCTTGGCAAGTACAAGGAAGAAGACAGCATAGTTACACGGAAGGTGATGGAATATTCCATCAAATATTAACCTTACCTCCTGGATACTTAGTCCCTTATCACTCCACTACTGCATACAGTTATACTCAAACTTGGGCAAGTAGACCTGATGAGTTAACATTTAGAAGAAACGGATATATTTATACTATTAAAAATCTAGGAAATGGTAATGCTGAATTGGGCGTAATTATTCACGCTGATGAGGCTGCAGCTATTTTCCTACCTAGATTAAGAGTAACAGTTCAACGCCTTACCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
3ae25624589da89c3ce9ee57088763b2b5585a00d4ffd9dcd34ed59825d99d27
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,2502
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The novel Salmonella phage vB_SpuM_X5 destroys the biofilm produced by Salmonella and its application in food Jin,X. and Sun,X. 2024-11-22 — GenBank