Protein

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Genbank accession
XAL80343.1 [GenBank]
Protein name
receptor binding tail protein
RBP type
TSP
Evidence DepoScope
Probability 0,97
TSP
Evidence RBPdetect
Probability 0,90
Protein sequence
MGFFAGKYSDGKTVLSLNTASGGDINAHKNPSTNTIFHSDMPFVLVESTYESALSSAGNGFYVCQMPSAIANLKSNDPGRVILTAIEVNGTHRGFLNGTQSQVGQFLSSTQADPFRSFASLSQTAGFAFGNSLASGTYSYNSSLGHEESIARSGTGGTVLHSTYHGVVRPGGGAPVGATVAETFKQLGYPIGSTSVPISSGDTYYWDPNWMAPMGAGKRGHNWFYVCNSNIRGYAGYKQTIPSNIVQHFSDGGYRYVCRGSTTKLVSQSANTKIVQDGYGVTPTKVIWYVLNLRYSNGGMSVSSNPFTGSDIIISPSNFTIKGVKLSTTGWKFINQNALGNLSSRADMEYIGVNAAHGGVFGDTTGRCEFVCSNKGSIWAPVNYSGTRAQLSIYKFSASKTWYVNSNNNTIGNENGVVWGPSSIPLRLLSGNVASAYIGNDITPTYPGTGNVYKSLAAVGLGLPNNNSTVILTSEILSGNLNVAGLPVNTWNGSVFQVQGRKSQSYTGGDAIFHQILVLPPGKLVPFHTTSAYKYTPDSGAFSRNSFIYTIKNLGNGNAELGVILHVSLGSAVFLPRLRVTVQRLT
Physico‐chemical
properties
protein length:586 AA
molecular weight: 62284,95850 Da
isoelectric point:9,37772
aromaticity:0,10751
hydropathy:-0,12935

Domains

Domains [InterPro]
IPR059609
RBD
1–586
IPR059609
XAL80343.1
1 586
Architecture
RBD
RBD 1-586
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XAL80343.1
1 586
Domain Start End Length (AA) Confidence
N-terminal 1 153 153 0,0011
Central domain 154 352 200 0,2339
C-terminal 353 586 233 0,9619
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-153
Central
154-352
C-terminal
353-586

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage SCF
[NCBI] 		3143147 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella enterica
[NCBI] 		28901 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XAL80343.1 [NCBI]
Genbank nucleotide accession
PP735124 [NCBI]
CDS location
range 106304 -> 108064
strand +
CDS
ATGGGTTTTTTCGCTGGAAAATATAGTGATGGTAAAACTGTATTATCACTAAATACTGCTAGTGGTGGAGATATTAATGCTCATAAAAACCCTAGTACTAATACTATTTTTCATTCTGATATGCCCTTCGTATTAGTAGAAAGCACTTATGAGAGTGCATTAAGTAGTGCTGGGAATGGTTTCTATGTATGCCAGATGCCTTCTGCAATAGCTAACTTAAAGAGTAATGATCCTGGTAGAGTTATACTAACAGCTATAGAAGTTAATGGTACCCATCGTGGTTTTTTGAATGGTACTCAATCTCAAGTTGGGCAGTTTCTTTCTTCTACTCAGGCCGATCCTTTTAGATCATTTGCTAGCTTAAGTCAAACTGCTGGATTTGCTTTTGGTAATAGTCTAGCTTCAGGTACTTATTCCTATAATAGTTCTCTAGGGCATGAAGAATCTATAGCTAGAAGTGGTACTGGCGGTACTGTACTACATAGTACTTATCATGGTGTTGTAAGACCAGGTGGTGGTGCACCTGTAGGTGCTACTGTAGCTGAAACTTTCAAACAACTAGGGTATCCTATAGGAAGTACTTCTGTTCCTATATCTTCAGGTGATACGTACTATTGGGATCCTAACTGGATGGCTCCAATGGGGGCTGGTAAACGTGGCCATAACTGGTTTTATGTATGTAATTCTAATATTAGGGGGTATGCTGGATACAAGCAAACAATCCCTAGCAATATAGTACAACACTTTAGTGATGGTGGGTATAGATATGTTTGTAGAGGTTCTACTACTAAGTTAGTAAGTCAATCAGCTAATACAAAAATAGTTCAAGATGGCTACGGAGTAACCCCTACAAAAGTTATATGGTATGTACTAAACCTAAGGTATTCTAATGGTGGTATGTCTGTTTCTAGTAACCCCTTCACAGGTTCTGACATAATAATTTCTCCGTCCAACTTTACTATTAAGGGGGTCAAGTTATCTACTACTGGTTGGAAGTTTATTAATCAGAATGCTTTAGGGAATCTAAGTTCTCGTGCTGATATGGAGTATATTGGAGTGAACGCTGCTCATGGTGGAGTGTTTGGGGATACTACTGGAAGATGTGAATTTGTATGCTCTAACAAAGGATCTATATGGGCACCAGTCAACTATAGTGGTACAAGAGCACAACTTAGTATTTATAAGTTCTCTGCTAGTAAGACCTGGTATGTAAACTCTAATAATAATACTATTGGTAATGAGAATGGTGTTGTCTGGGGACCTTCATCAATACCTTTACGCCTATTATCCGGTAATGTGGCCAGTGCCTATATTGGTAATGATATTACTCCGACCTATCCTGGCACTGGTAATGTTTATAAATCCCTAGCAGCAGTTGGACTAGGCCTACCCAATAATAACTCTACTGTTATACTAACTAGTGAAATATTATCGGGTAACCTTAATGTTGCTGGATTACCAGTAAATACGTGGAATGGTAGTGTTTTTCAGGTGCAAGGAAGAAAATCACAAAGTTATACGGGAGGGGATGCTATATTTCACCAAATTTTAGTTCTTCCTCCTGGAAAATTAGTGCCTTTCCATACTACTTCTGCTTATAAATATACTCCAGATAGCGGAGCTTTTAGTAGAAACAGTTTTATATATACAATAAAAAATCTTGGTAATGGTAATGCAGAATTAGGTGTTATACTACACGTTAGTTTAGGTTCCGCAGTTTTCTTACCGAGACTACGAGTAACAGTTCAACGCCTTACCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
b91bee690f77fa37f5653657c93c49bb705a2c127ac3d8c72d75d881f81317ed
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,2678
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization of a lytic phage that eliminates Salmonella Enteritidis from contaminated fresh produce Dapuliga,C.C. and Schmidt,S. 2020-12 — GenBank