Protein

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Genbank accession
XQO94835.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MTVTAAELDSLVKTIRIIVNTKLKPNADILERFSLFNEVISLGSGEVLRSLKKFEDDNQEIVNELISSLGAANLLGNTLVSQLLITDAGQALLDAATINDQISISEIVLGDGAGELYVPTGLETQLRNEVWRGLASNPIADKNSPQFLYFDGLVGGDEGPFTVREIGLYVGTVLFAIGITPVFIKPNTLVESAETLVARALLELSSAEQTLLFSVDNPLNSHSSLSDRDSEGSHPASAVSTSDGRDVQTVLNETLKLKGEWTPGVTVALGDIWGYQGSEWRSLTGVSIEPTEGDDWREFGVDNTEYRRQTTVAEVESGEFKVGDYIELTDRAGAKFNVVAGGTPNGYDIINAGNGNTAVITGVVRSSHFGISGVGDETEVLQAYFDYAEKQSEIFLDSDVFVDTTKNDVPNTDPRPPVDPGETGKAAIIINNKVKCHSTHKVTALAGTGTTTYNFLFSTNTDDGIDLSFEIQGNRDGGAPASSVGIQVNNHNVTTKMSGGNFGSSPLILNGNTRTDPLLGQFHDDHVYENVGNSIFCRYVKGGQAKNWNVTYVSEGVDLDKTCDGMNLDGWTVTATRGSGADAAIEMNGAKNCTANNLLSIGYKTGIILNAKERYDEPGVYDRCEGCHVDDAIVISPTHIGITVGNVTGDYTDTVNCSIDRAKVYNAGDSTGISLSGINLSAEDCSVFGGNREGILIRGGNVNVDGAEVYEVAMTGIEVLTGAKASLKNANVVNANTSGGGYNGIHVNTGADADITGAKVEGAAEYSFRKLGDGEVIFGNNVFSGGISGDFRYSSTASMVQVGDGSGSVFGGVSLGSGRKVFYASKTYAPTTSLGMVAGDLLIHNDATEIGDHQGRVCYAVSGGSIPLFRNFGKVE
Physico‐chemical
properties
protein length:876 AA
molecular weight: 92559,41100 Da
isoelectric point:4,55669
aromaticity:0,07192
hydropathy:-0,15046

Domains

Domains [InterPro]
DC_1371
STR
80–474
DC_1371 IPR012334
IPR022225
ATT
83–210
IPR022225 IPR012334
Coil
Unmapped
190–210
Coil
XQO94835.1
1 876
Architecture
ATT
STR
STR
ATT 80-210 | STR 211-474 | STR 540-812 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XQO94835.1
1 876
Domain Start End Length (AA) Confidence
N-terminal 1 377 377 0,9969
Central domain 378 813 437 0,9872
C-terminal 814 876 62 0,9694
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-377
Central
378-813
C-terminal
814-876

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage VPALA
[NCBI] 		3400948 Viruses > unclassified bacterial viruses >
Host Vibrio anguillarum ALA
[NCBI] 		1416571 Arthropoda > Malacostraca > Decapoda > Mithracidae >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XQO94835.1 [NCBI]
Genbank nucleotide accession
PV171464.1 [NCBI]
CDS location
range 123422 -> 126052
strand -
CDS
ATGACAGTAACAGCAGCAGAGTTGGATAGTCTAGTCAAGACGATACGAATCATCGTCAACACTAAGCTCAAACCTAACGCCGATATCCTTGAGCGTTTTTCTCTTTTCAATGAAGTTATCAGCCTGGGCAGCGGTGAAGTTTTGAGATCTTTGAAGAAATTCGAAGATGATAACCAAGAAATTGTTAACGAGTTGATTTCGAGTTTAGGTGCAGCAAACTTGCTCGGCAACACGTTAGTTTCACAACTGTTGATTACCGACGCTGGCCAAGCGTTGTTGGACGCGGCTACTATCAATGATCAAATTTCAATATCTGAGATCGTGCTGGGTGATGGCGCGGGTGAGTTGTATGTCCCGACTGGCCTGGAAACCCAACTCCGAAATGAAGTTTGGAGAGGTTTAGCTTCTAACCCGATCGCAGATAAGAACAGCCCACAGTTCCTTTATTTTGATGGTCTAGTTGGAGGCGACGAAGGGCCGTTCACGGTTAGAGAAATTGGGCTTTATGTTGGAACGGTGCTCTTCGCGATTGGTATCACTCCTGTTTTCATCAAACCTAATACATTGGTCGAAAGCGCCGAGACTCTAGTGGCGCGTGCTCTGTTGGAGTTGAGCAGTGCTGAGCAGACGTTACTGTTCTCCGTTGACAACCCGCTCAACTCTCACTCTAGTCTGTCTGACCGTGATTCTGAGGGGTCTCACCCCGCGTCTGCGGTGTCGACATCGGATGGAAGAGATGTACAAACCGTCTTAAATGAAACTTTGAAGTTGAAAGGCGAATGGACACCAGGTGTCACTGTTGCACTTGGTGATATCTGGGGGTATCAGGGGTCAGAATGGCGCTCTCTTACCGGAGTTAGCATTGAGCCAACTGAAGGTGACGATTGGAGGGAGTTTGGTGTAGATAACACGGAATACAGAAGACAAACAACGGTCGCAGAGGTTGAGTCTGGCGAATTTAAAGTAGGTGACTACATAGAATTAACTGATCGAGCAGGAGCTAAGTTTAATGTTGTGGCTGGTGGTACGCCTAATGGTTATGACATTATCAATGCAGGCAATGGGAATACTGCTGTTATTACTGGAGTGGTTAGATCGTCCCATTTTGGTATTTCTGGCGTTGGTGACGAGACGGAAGTGTTACAGGCTTACTTTGATTATGCAGAAAAGCAGAGCGAAATATTTTTAGATAGTGATGTTTTTGTAGATACGACAAAGAACGACGTTCCGAACACCGATCCGCGCCCGCCAGTTGACCCTGGAGAAACAGGTAAGGCGGCGATTATAATTAACAATAAAGTTAAATGCCATTCAACACACAAAGTAACCGCTCTTGCTGGAACTGGAACAACAACTTATAACTTTTTGTTCTCAACAAATACAGATGACGGGATAGACCTTTCTTTTGAGATACAAGGTAATCGTGATGGTGGTGCTCCTGCTTCATCTGTGGGTATACAGGTAAACAATCACAATGTGACCACTAAAATGTCTGGTGGCAACTTCGGCAGTTCGCCTTTAATTTTGAATGGTAATACTAGAACAGACCCGCTTCTTGGGCAGTTTCATGATGACCACGTTTATGAGAACGTAGGAAACTCTATTTTTTGTCGATACGTAAAAGGTGGGCAAGCAAAAAACTGGAATGTTACATACGTATCAGAAGGCGTTGATTTAGATAAAACCTGTGATGGTATGAATCTTGATGGATGGACAGTTACAGCAACCAGAGGCTCTGGCGCTGATGCTGCAATAGAAATGAACGGTGCTAAGAACTGCACCGCTAACAATTTACTATCTATCGGATATAAGACTGGTATTATTTTAAACGCTAAAGAACGATACGACGAACCAGGTGTTTATGATCGATGCGAGGGATGTCACGTAGATGATGCGATTGTTATTAGCCCGACACATATAGGTATAACTGTTGGTAATGTCACAGGTGATTATACAGACACTGTTAATTGTTCAATTGATAGAGCTAAGGTTTACAATGCAGGTGATTCTACTGGCATATCTCTTTCCGGCATAAATTTGAGCGCAGAGGACTGCTCTGTTTTCGGCGGCAATAGGGAAGGTATTTTAATCCGAGGCGGTAATGTTAACGTTGACGGTGCTGAGGTTTATGAGGTTGCAATGACTGGCATAGAAGTTTTGACAGGAGCAAAGGCAAGCCTTAAGAATGCAAATGTGGTAAACGCAAATACTTCAGGCGGCGGATATAACGGAATACATGTCAATACTGGTGCAGACGCCGATATTACAGGGGCAAAAGTAGAAGGTGCTGCTGAATACAGTTTTAGAAAATTAGGGGATGGCGAGGTTATATTTGGTAATAACGTATTTTCTGGCGGTATATCTGGTGATTTCCGATACTCTTCGACTGCTTCCATGGTTCAAGTTGGTGATGGGTCCGGTAGTGTTTTTGGTGGGGTTTCGCTAGGATCGGGAAGAAAGGTGTTTTATGCGTCAAAAACATATGCACCAACTACATCACTAGGTATGGTAGCTGGTGATTTGTTAATACATAATGATGCTACTGAAATTGGAGATCACCAAGGAAGAGTGTGTTACGCCGTTTCAGGTGGTAGCATTCCACTATTTAGAAACTTTGGTAAAGTAGAGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
a0c77754145adb2912bae178b9b85adc60a0317feaf23f858488307f1ad75aa8
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3023
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Vibrio anguillarum phage VPALA Altinok,I., Ture,M., Cebeci,A., Ozturk,R.C. and Ustaoglu,D. 2015-10 — GenBank