Protein

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Genbank accession
YP_009622474.1 [GenBank]
Protein name
virion structural protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MALERQEVKNAVGIITDVAPADLPMEKWSSGNNVRFKNGKAQKALGYQYIFGTGDFPTLTLFPFIQDKVPYWVLGAANQLYTADGTTILNVSRTTGGAYNASPTDNWIGSSLNGVLVMNNPNDVPQAKLPNTNNFVNLPNWPANTTARIMRPYKNYLIALNVSKNSVENNTLVKWSSPADPGNVPFTWDETDPKNDAGENTLADTNGAIVDGRKLRDQFIIYKEDSVYSMRYIGGIYVFQFAQLFDDVGMLGPNCAVEFDGKHFVVGNGDVYVHNGVQKASVIDGKMRNFLFNDINSENYKKTFVVADHLNTEMWICYSSTRVDIGSYCDRAIVWNWVEDTWAIRDLPNVSGGAYGIIDPKESNLWMDDNNAWESDTTVWGEGSYNPSKSKLLFTSFTEEKIFLMGDLTTFADQPFLSSLERTDIYMGEDRYMKTISAIIPHMSGNGVCNIYVGSADVQGAGVRWRGPYPYQIGYQYKIDTKVVGRYIGLKFEFPSNGNWTFNGYSVEYAPLAGMR
Physico‐chemical
properties
protein length:516 AA
molecular weight: 57699,11050 Da
isoelectric point:4,98026
aromaticity:0,12791
hydropathy:-0,33450

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009622474.1
1 516
Domain Start End Length (AA) Confidence
N-terminal 1 374 374 0,7147
Central domain 375 505 132 0,1683
C-terminal 506 516 10 0,9919
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-374
Central
375-505
C-terminal
506-516

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage Bjorn
[NCBI] 		2079288 Uroviricota > Caudoviricetes > Bjornvirus >
Host Pseudomonas sp.
[NCBI] 		306 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009622474.1 [NCBI]
Genbank nucleotide accession
NC_042103 [NCBI]
CDS location
range 6371 -> 7921
strand +
CDS
ATGGCTCTAGAGAGACAAGAGGTAAAGAATGCCGTAGGCATCATCACTGACGTAGCGCCTGCTGATCTCCCTATGGAAAAGTGGTCCAGTGGTAACAACGTCCGGTTCAAGAACGGTAAAGCGCAGAAGGCCCTTGGGTATCAGTACATCTTTGGTACTGGTGATTTCCCAACCCTGACGCTCTTTCCGTTCATTCAGGACAAGGTTCCCTATTGGGTACTCGGAGCTGCCAACCAACTGTACACAGCCGATGGTACAACCATCCTCAATGTGTCTCGTACCACAGGTGGAGCGTACAACGCTTCCCCTACGGACAACTGGATTGGTAGCTCTCTCAATGGGGTTCTCGTGATGAACAACCCCAACGATGTCCCACAGGCCAAACTGCCCAATACGAACAACTTTGTGAACCTGCCCAACTGGCCAGCGAACACTACTGCTCGTATCATGCGTCCCTATAAGAACTACCTGATCGCGCTCAATGTGAGCAAGAACTCGGTAGAGAACAACACGCTGGTCAAGTGGTCTAGCCCTGCTGACCCCGGTAACGTCCCATTCACTTGGGATGAGACTGACCCTAAGAACGACGCAGGTGAGAACACTCTGGCTGACACCAACGGCGCTATCGTCGATGGTCGTAAGCTACGGGACCAGTTCATCATCTACAAGGAAGACAGCGTATACTCCATGCGATACATCGGTGGGATCTACGTCTTCCAGTTCGCTCAGTTGTTCGATGACGTTGGGATGCTTGGTCCTAACTGCGCTGTAGAGTTCGATGGTAAGCACTTCGTGGTGGGTAACGGCGACGTCTACGTCCACAATGGTGTCCAGAAGGCTTCTGTGATTGACGGTAAGATGCGGAACTTCTTGTTCAACGACATCAACTCCGAGAACTACAAGAAGACCTTTGTGGTGGCTGACCACCTGAACACTGAAATGTGGATCTGCTACAGCTCGACCCGAGTGGACATTGGGAGCTATTGCGACCGTGCCATCGTGTGGAACTGGGTAGAAGATACGTGGGCAATTCGAGATTTACCTAACGTATCAGGTGGCGCTTATGGTATCATTGATCCTAAGGAGTCGAATCTTTGGATGGATGATAACAACGCTTGGGAGTCCGACACCACGGTGTGGGGTGAGGGTTCGTATAACCCATCCAAGAGTAAGCTACTGTTCACCTCCTTCACCGAGGAAAAGATCTTCCTCATGGGTGATCTGACTACCTTTGCAGACCAACCGTTCCTCTCCAGTCTGGAGCGTACGGACATCTACATGGGTGAAGACAGGTACATGAAGACGATCTCTGCGATCATCCCCCATATGTCAGGCAACGGTGTGTGTAACATCTATGTCGGCTCAGCGGATGTGCAGGGTGCTGGTGTACGCTGGAGAGGACCATATCCTTACCAGATCGGCTACCAGTACAAGATCGACACGAAGGTCGTAGGGCGGTACATCGGACTCAAGTTCGAGTTTCCATCCAACGGTAACTGGACATTCAACGGCTACTCGGTAGAGTACGCACCACTTGCAGGAATGAGATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
076de5432bd1996067f5d2d842a16c7cd42706e0a4a85947bd27fc2d774ce0bb
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,9034
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Pseudomonas phages infecting Pseudomonas sp. isolated from Prunus avium Colberg,O., Carstens,A.B., Kot,W. and Hansen,L.H. 2013-08 — GenBank