Protein

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Genbank accession
YP_009842144.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 0,98
TSP
Evidence RBPdetect
Probability 0,87
Protein sequence
MARLNYKEVLKGETGSHYKPHITSQGILYWTNNGNLPNPTPYKVKGDKGDKGDKGDKGDKGDKGEVTEIFSINSELLKIKCVTPNKVSFLDVISDNLIVYYDLYDDLAIRKDGTVYKLEGYALTDYIEVESNTEYIFSGNTNICLYDNEKSFILGYSSNEWNSRLNTTENTKFIRWCLPKIDINTSSILKIGGSKKVNYKLDEILTENLINDIKFNFVMSNLKDKKVSILGDSISSLDYTRPNWCEIISNKTGLIFNNYGISGTTIAYNEHRENIHGKCFANRVNDLKECDYVIIMGGTNDVNSNIPLGNWDDNTNETLFGAINIILTTLLNKFVGKTILWCSPIQDKNSYKNKPLPNIEESVLTTSSSAYVNYSLLIGAIKLKCRQYGIKFVNLYDNSGINGFDNEHIYYRANDTVHPSELGNEKISNLILNNII
Physico‐chemical
properties
protein length:436 AA
molecular weight: 49263,07170 Da
isoelectric point:5,81209
aromaticity:0,10092
hydropathy:-0,41491

Domains

Domains [InterPro]
DC_1165
STR
7–250
DC_1165
IPR051532
Unmapped
169–435
IPR051532
SSF52266
STR
218–435
SSF52266
IPR036514
STR
220–436
IPR036514
IPR036514
STR
221–436
IPR036514
cd00229
ENZ
227–433
cd00229
IPR013830
ENZ
230–425
IPR013830
YP_009842144.1
1 436
Architecture
STR
STR 7-436
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009842144.1
1 436
Domain Start End Length (AA) Confidence
N-terminal 1 205 205 0,4685
Central domain 206 404 200 0,3177
C-terminal 405 436 31 0,9556
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-205
Central
206-404
C-terminal
405-436

Taxonomy

  Name Taxonomy ID Lineage
Phage Clostridium phage CPD2
[NCBI] 		2420237 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Clostridium perfringens
[NCBI] 		1502 cellular organisms > Bacteria > Bacillati > Bacillota > Clostridia > Eubacteriales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009842144.1 [NCBI]
Genbank nucleotide accession
NC_048738.1 [NCBI]
CDS location
range 13587 -> 14897
strand +
CDS
ATGGCAAGATTAAATTATAAAGAAGTTTTAAAAGGTGAAACAGGTTCTCACTATAAACCACATATAACATCACAAGGTATATTGTATTGGACAAATAACGGTAATTTACCTAACCCTACTCCATACAAAGTTAAAGGTGATAAAGGTGATAAAGGTGATAAAGGTGATAAAGGTGATAAAGGTGATAAAGGCGAAGTAACGGAAATTTTTTCAATTAATTCAGAACTATTAAAGATTAAATGTGTTACACCTAATAAAGTGAGTTTTTTAGATGTCATAAGTGATAACTTAATTGTTTACTATGATTTATATGATGATTTGGCTATAAGAAAAGACGGTACTGTTTATAAACTTGAGGGGTACGCACTAACCGATTATATTGAGGTTGAAAGTAACACAGAATACATCTTTAGCGGTAATACTAACATCTGTTTATATGACAATGAAAAGAGTTTTATTTTAGGTTATAGTTCCAATGAATGGAATTCACGATTAAATACAACTGAAAACACAAAATTTATCAGATGGTGTTTACCAAAAATAGATATAAATACGTCATCTATATTAAAAATAGGTGGAAGTAAAAAAGTTAACTATAAATTAGATGAAATTTTAACAGAGAACCTTATTAATGATATAAAATTTAATTTTGTAATGTCTAATTTAAAAGATAAAAAAGTTAGTATATTGGGTGATAGTATTAGTTCACTAGATTATACTAGACCCAATTGGTGTGAGATTATATCAAATAAAACAGGACTTATCTTTAATAATTATGGTATAAGTGGCACAACAATTGCATATAATGAACACCGAGAAAATATTCATGGAAAATGTTTTGCTAATAGAGTGAATGATTTAAAAGAATGTGATTATGTAATAATTATGGGTGGAACTAATGACGTAAATAGTAACATTCCTTTAGGTAATTGGGATGATAATACAAATGAAACTTTATTTGGTGCAATAAATATAATATTAACTACTTTATTAAATAAATTTGTTGGTAAAACTATATTATGGTGTAGCCCTATACAAGATAAAAACTCTTACAAAAATAAACCTTTGCCAAATATTGAAGAATCAGTTTTAACAACTTCTTCATCAGCATATGTCAACTATTCATTATTAATTGGTGCTATTAAACTAAAGTGTAGACAATATGGTATAAAATTTGTAAATTTATACGATAATAGCGGAATAAATGGTTTTGATAATGAACATATTTATTATAGAGCTAATGACACAGTACACCCAAGTGAATTAGGTAATGAAAAAATTTCAAATTTAATATTAAATAATATTATTTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
19cf45de94501eb84552353ebfe3c87bc81eded4029a72fc3a50a6400312f5c0
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7798
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Clostridium perfringens phage CPD2 Shin,D. and Ryu,S. 2023-05-24 — GenBank