Protein

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Genbank accession
AIX31609.1 [GenBank]
Protein name
tail collar domain protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect2
Probability 0,87
Protein sequence
MSQINFPNIPSDGDEFLAPNGTTYQYDSDTGQWKILLGPGADGPKGPIGPEGATGSTGPDGPTGATGTDATRITGEIIAFGGTTVPSGWLECNGQAAPSALAAVLGISNVPDLRGEFIRGFDNGRGVDSGRAILTAQGDEFESHTHIQNSHNHTQNPHTHQANYTPLTYVAGQPQANGLVTAVTALTNISTNTATNVANTATNQSTGGTETRPRNISLMYIIKT
Physico‐chemical
properties
protein length:224 AA
molecular weight: 23175,01340 Da
isoelectric point:4,90415
aromaticity:0,05804
hydropathy:-0,43125

Domains

Domains [InterPro]
SSF88874
STR
71–223
SSF88874
IPR037053
ATT
74–119
IPR037053
IPR011083
ATT
75–118
IPR011083
SSF88874
STR
75–223
SSF88874
AIX31609.1
1 224
Architecture
ATT
STR
ATT 74-119 | STR 120-223 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AIX31609.1
1 224
Domain Start End Length (AA) Confidence
N-terminal 1 212 212 0,4429
Central domain 213 213 2 0,0031
C-terminal 214 224 10 0,9829
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-212
Central
213-213
C-terminal
214-224

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage ACG-2014f
[NCBI] 		1493511 Uroviricota > Caudoviricetes > Pantevenvirales > Atlauavirus > Atlauavirus tusconc8
Host Synechococcus sp. WH 7803
[NCBI] 		32051 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AIX31609.1 [NCBI]
Genbank nucleotide accession
KJ019100 [NCBI]
CDS location
range 204971 -> 205645
strand +
CDS
ATGTCTCAAATCAATTTCCCAAATATCCCATCAGATGGTGATGAGTTTTTGGCACCCAATGGTACAACTTACCAATATGATTCCGACACAGGTCAGTGGAAGATTCTATTAGGTCCTGGTGCCGATGGTCCCAAGGGTCCTATAGGTCCTGAAGGTGCTACTGGATCCACAGGTCCCGATGGTCCTACTGGTGCTACTGGAACGGATGCTACAAGAATAACTGGTGAGATTATTGCATTTGGTGGAACTACTGTTCCATCTGGTTGGCTTGAATGTAATGGTCAAGCTGCTCCTAGTGCTCTTGCTGCTGTATTAGGTATATCTAATGTACCAGACTTACGTGGTGAGTTTATAAGAGGATTTGATAACGGTAGAGGTGTTGATAGTGGCCGTGCCATTCTCACCGCTCAGGGTGATGAATTTGAGAGTCACACACACATTCAAAATTCCCATAACCATACACAAAATCCACACACTCACCAAGCAAATTACACACCCTTAACCTATGTGGCGGGGCAACCACAAGCAAATGGATTGGTTACCGCGGTAACAGCTCTAACAAACATTTCCACAAACACAGCAACTAATGTTGCAAACACAGCAACCAACCAAAGCACAGGTGGCACTGAAACCCGTCCACGCAACATATCTCTGATGTACATCATTAAAACCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
48de0b401c0637767362ce658d5e84880fd809c8a2c300e48ece87eb4ed09eb6
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8019
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Ecological redundancy of diverse viral populations within a natural community Gregory,A.C., LaButti,K., Copeland,A., Woyke,T. and Sullivan,M.B. 2015-03-20 — GenBank