Protein

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Genbank accession
YP_010767177.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,91
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MANITKPIGLSNVWADGGTKIDPGASKVNIGWVVQLPPYEYQNWIDNRQDRAIAHFSQHGVPEWDGVTEYQGLLSYAQGSDGIIYKCIQTNVNKDPANPLNDAFWARAFEDYGSVAAVQAQLNAHITNYQSLSGIGNVAGARANLSVYSKVESDTRFAGLNGNSAQVFAVAVATQPEHAVRLGQVNSLLTQATEANLGVVRLATSGVTEAGTDDLRAITPLKAATVYLKKSGNLAGLGNTVTARNNLGLGDIATESQASYAKTANNLSDLASVVSARSNLGLTSTATQPETYFLRTALNLADLTNTVTARANLGLTSLANTPAADVLHRADNLQGLPNVALARSNLGLSDSVIYPSNTWLVRVNNLADLPNAQAARNNLGLGNLSTRNVFGVPGDLDFTISKTLGGYTNLPNGLIMQWGQGPALGDDQGTTVGLFVAMNVVSVQITGIGAATNGIGPGFLTQGWTTTSFQVYNNYNSGPSRPFSWLAIGYV
Physico‐chemical
properties
protein length:491 AA
molecular weight: 51716,07730 Da
isoelectric point:5,75514
aromaticity:0,07536
hydropathy:-0,07984

Domains

Domains [InterPro]
DC_0043
STR
1–306
DC_0043 DC_0362
G3DSA:2.60.40.3940
RBD
400–490
G3DSA:2.60.40.3940
IPR054075
RBD
410–490
IPR054075
YP_010767177.1
1 491
Architecture
STR
RBD
STR 1-306 | RBD 326-490 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage phiPsa397
[NCBI] 		1460367 Uroviricota > Caudoviricetes > Vandenendeviridae > Otagovirus > Otagovirus psa397
Host Pseudomonas syringae pv. actinidiae
[NCBI] 		103796 Bacteria > Proteobacteria > Gammaproteobacteria > Pseudomonadales > Pseudomonadaceae > Pseudomonas

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010767177.1 [NCBI]
Genbank nucleotide accession
NC_073683.1 [NCBI]
CDS location
range 55548 -> 57023
strand +
CDS
ATGGCAAACATTACAAAACCAATTGGCCTGAGCAATGTTTGGGCCGATGGTGGTACGAAGATTGATCCGGGTGCCTCTAAGGTTAACATCGGGTGGGTTGTTCAGCTTCCACCATACGAATATCAAAACTGGATTGACAACCGTCAAGATCGTGCCATTGCTCACTTTAGTCAGCATGGTGTTCCAGAGTGGGATGGTGTTACAGAGTACCAAGGGCTTCTGAGCTACGCTCAAGGCTCCGACGGTATCATCTATAAGTGCATCCAAACCAACGTCAACAAAGACCCAGCAAACCCTTTGAACGATGCCTTCTGGGCACGTGCGTTTGAAGACTACGGCTCTGTTGCTGCTGTACAGGCACAGTTGAACGCTCACATCACAAACTACCAATCTCTTTCTGGAATTGGTAACGTTGCTGGTGCCCGAGCTAACTTGTCTGTCTACTCTAAAGTTGAAAGCGACACACGCTTCGCTGGCTTGAATGGTAACTCTGCTCAAGTGTTTGCTGTTGCTGTTGCAACACAACCAGAACATGCTGTACGTTTGGGGCAAGTTAATAGCTTGCTGACACAGGCTACAGAAGCAAACCTTGGTGTTGTTCGTCTTGCAACTAGCGGTGTAACAGAAGCTGGCACAGACGACCTAAGAGCCATCACTCCATTGAAGGCAGCTACAGTCTACCTCAAGAAGAGTGGAAACCTAGCTGGACTTGGAAACACTGTTACAGCTCGAAACAACCTTGGACTTGGTGATATCGCAACTGAGAGTCAAGCGTCCTACGCTAAGACTGCAAACAACCTGAGCGACCTTGCAAGTGTTGTATCGGCTCGTAGTAATCTTGGCCTAACCTCCACTGCTACGCAGCCTGAAACATACTTCCTGAGAACCGCTCTCAACCTTGCAGACCTTACAAACACTGTTACTGCAAGAGCAAACCTTGGCCTAACATCTTTGGCTAACACTCCTGCTGCTGACGTTCTCCACAGGGCTGACAACTTGCAGGGGCTGCCTAACGTCGCTCTCGCACGTTCCAACCTTGGACTGTCTGACTCTGTTATCTACCCAAGCAACACTTGGCTGGTGAGAGTTAACAACCTAGCTGATCTGCCTAACGCACAAGCTGCACGTAACAACTTGGGACTTGGTAACTTGTCCACACGTAACGTGTTCGGTGTACCGGGTGACTTGGACTTCACAATCTCCAAAACTCTTGGTGGATACACAAATCTGCCTAACGGTTTGATTATGCAGTGGGGCCAAGGCCCAGCTCTGGGAGACGACCAAGGAACAACAGTTGGATTGTTTGTGGCGATGAACGTTGTATCTGTGCAAATTACAGGTATCGGTGCCGCAACTAACGGTATCGGGCCGGGGTTCTTGACTCAAGGCTGGACAACCACAAGCTTCCAAGTTTACAACAACTACAACAGTGGGCCTTCTCGTCCATTCAGTTGGCTTGCAATCGGGTACGTTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
d58ef8c2564d64702a1aa6e92b991722ed08b182b2c01157a62f8d6a4df11349
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7573
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization of Pseudomonas phiPsa374-like phages Warring,S., Malone,L.M., Easingwood,R.A., Rigano,L., Frampton,R.A., Lopez Acedo,E., Templeton,M.D., Kleffmann,T., Bostina,M. and Fineran,P.C. 2024-10 — GenBank