Protein

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Genbank accession
AVI24636.1 [GenBank]
Protein name
putative tail protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MAILSDYTTGTISIANGSTTVTGVNTAWTLAELQEGDLILVNNRSAVIQSVNSATSITITRPWTDTAVPAGTPYRARYMADAARYTAIAKALLTMLASGNVEALAGLIGAADKLPYFTGAATMGLADFTALGRSIVNKANTLALLAAPGPLGPVLGGVAPAPSEAGVGMADGDFNTVIYPGVYTIAGSWTNGYNGAAAAAYTGILMVLARKFNNLYYQFYYQGDLVWARSSSAPTTSWTTWTQLTQETAAGEFLKNKTIANNSPQLFFRDTDTGAEAQLNGASAAGSFFINVDRTNLFPNSVLGLQLSGTTKLTLSGTSATLTTPLNINSSGDGANLITFATERAWTVRQRGTGSAAQLSFENIQNKAVEFSSETSYTGPQISLLPYGGVSTQILNGNTSNSGHTTPSYSFQGATGTGFYGYNTTTIAFASAGSRIGYMNSIGLTLGERLTTSSATPGIGLIMNASNGTILSFGSTVSSLTVLQCYLDSANTPTVAGRLLASTSGGGTLSLATGSDHRMKTQVENLVDVQISAEDFATMSPSLLRLLSLRPVSYYWGDEPDLKRGFIAHEMQPILPHAVFGEKDAMKEYGTAVRKGAVIPAYTVKEAVEKTIQVPVEIEVGGELKTVMVDQVIMEYVDRVVPEQVEPDEVFEYVLHEDYPDCEWTKTHEEMDLQAVDHAKIIPDLVAAVQELSMIVLEERREKQALETRLAAIEAQLGIA
Physico‐chemical
properties
protein length:720 AA
molecular weight: 76390,10500 Da
isoelectric point:4,82071
aromaticity:0,08056
hydropathy:0,01750

Domains

Domains [InterPro]
DC_0924
STR
1–707
DC_0924
IPR030392
CHP
515–579
IPR030392 Coil
IPR030392
CHP
515–710
IPR030392
AVI24636.1
1 720
Architecture
STR
STR 1-710 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AVI24636.1
1 720
Domain Start End Length (AA) Confidence
N-terminal 1 617 617 0,2474
Central domain 618 709 93 0,2458
C-terminal 710 720 10 0,9965
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-617
Central
618-709
C-terminal
710-720

Taxonomy

  Name Taxonomy ID Lineage
Phage Sinorhizobium phage HMSP1-Susan
[NCBI] 		2049306 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Sinorhizobium meliloti
[NCBI] 		382 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Alphaproteobacteria > Hyphomicrobiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AVI24636.1 [NCBI]
Genbank nucleotide accession
MG214783 [NCBI]
CDS location
range 26066 -> 28228
strand +
CDS
ATGGCGATACTGAGTGATTACACAACCGGCACTATCTCCATTGCTAACGGTTCCACGACGGTTACCGGGGTAAACACAGCGTGGACCCTTGCGGAACTGCAGGAAGGCGATTTGATCCTAGTCAATAATCGCTCCGCCGTTATCCAGTCGGTCAACAGCGCAACGTCTATCACCATAACACGTCCGTGGACTGACACAGCGGTTCCCGCTGGCACACCTTACCGTGCTCGTTACATGGCAGATGCTGCGCGCTACACGGCGATTGCTAAGGCGCTGTTGACGATGCTCGCGAGCGGGAACGTTGAAGCGCTTGCCGGGTTGATAGGTGCGGCGGATAAATTGCCGTATTTTACCGGCGCCGCAACGATGGGGCTTGCGGATTTTACCGCCCTTGGCCGGTCGATTGTCAATAAAGCTAACACTCTTGCGCTATTGGCTGCACCCGGTCCGCTTGGTCCAGTTCTCGGTGGCGTTGCACCCGCTCCATCTGAGGCGGGTGTGGGAATGGCGGACGGTGATTTTAACACTGTCATCTACCCCGGCGTGTACACTATCGCCGGTTCATGGACGAACGGCTATAACGGTGCAGCAGCTGCAGCCTACACCGGCATTCTGATGGTATTGGCCCGCAAATTTAATAACCTCTATTACCAGTTCTATTATCAAGGCGATTTGGTATGGGCTCGTTCGTCTTCCGCGCCTACAACGAGTTGGACAACATGGACACAATTAACTCAAGAAACTGCCGCCGGGGAGTTTCTGAAGAATAAGACAATAGCGAACAATTCCCCTCAGTTGTTCTTTAGAGACACTGATACGGGGGCAGAAGCACAGTTAAACGGTGCGAGTGCTGCAGGAAGCTTTTTTATCAACGTTGACCGAACAAACCTTTTTCCAAATTCGGTGCTAGGTCTTCAACTATCGGGAACAACGAAACTCACACTTTCCGGAACATCGGCTACACTTACCACTCCGTTGAATATCAATAGTTCAGGAGACGGGGCAAACCTGATTACGTTTGCCACGGAAAGGGCGTGGACCGTCAGGCAGCGCGGTACAGGTTCAGCGGCTCAATTGTCGTTTGAAAATATTCAAAATAAAGCCGTCGAGTTCTCTAGTGAAACCTCCTACACGGGACCGCAAATATCCTTGCTCCCCTACGGCGGTGTTTCCACACAAATATTGAATGGTAATACATCCAATTCGGGACACACAACGCCAAGCTACTCGTTCCAAGGTGCAACCGGAACCGGCTTCTATGGGTACAATACTACCACTATCGCCTTTGCTTCAGCGGGTTCTCGCATAGGTTATATGAATTCCATTGGGTTAACCTTGGGGGAGCGACTTACTACAAGTTCAGCAACACCGGGTATCGGCCTAATCATGAACGCGTCGAACGGCACTATTTTGTCGTTCGGTTCAACCGTTTCGAGCTTGACTGTTCTGCAGTGCTATCTTGATTCCGCGAATACCCCGACTGTTGCCGGAAGATTGCTCGCGTCCACGTCCGGCGGCGGCACGTTATCGCTTGCGACCGGTTCAGACCATCGCATGAAAACACAAGTTGAAAACTTGGTTGACGTGCAAATTTCGGCAGAAGACTTCGCCACTATGTCGCCATCATTGCTGCGGCTTTTGTCGCTCCGCCCGGTTAGTTATTATTGGGGTGACGAGCCGGACCTTAAGCGCGGCTTCATCGCTCACGAAATGCAACCGATACTCCCCCATGCGGTATTTGGCGAAAAAGACGCAATGAAGGAATACGGGACGGCGGTGCGCAAAGGTGCCGTTATTCCCGCGTACACAGTCAAAGAGGCGGTTGAAAAAACCATTCAAGTGCCTGTGGAAATCGAAGTAGGCGGCGAACTGAAAACCGTGATGGTTGACCAAGTCATCATGGAGTACGTGGACCGCGTTGTTCCTGAGCAAGTAGAACCTGACGAAGTTTTTGAATATGTACTGCACGAGGATTACCCGGATTGCGAATGGACGAAAACGCATGAAGAAATGGACCTTCAAGCGGTTGACCATGCGAAAATCATTCCGGACCTAGTTGCAGCGGTGCAAGAACTGTCAATGATTGTCCTTGAAGAACGCCGCGAGAAACAGGCACTTGAAACCCGCCTAGCCGCGATTGAGGCACAGCTAGGTATCGCCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
7f556923540037c67781a92a95c6a536c87ee14ea3bb44a6ab98b49b42c1baaf
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7260
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Nucleotide Sequence of Sinorhizobium Bacteriophage HMSP1-Susan Martinez-Vaz,B.M., Fleagle,B., Imamovic,A., Toledo,S., Couves,M., Jensen,A., Vang,M., Ashley,S., Young,N.D. and Sadowsky,M.J. 2018-05-03 — GenBank