Protein

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Genbank accession
YP_004327543.1 [GenBank]
Protein name
tail protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MISQFNQPHGSTSIFVNKQSIALNFGVTQDEVVYFAAGIDLSGYKVIYDESTQRAYSLPSGIVSGTTAISLDERAVLTHSAGSVDLGELAVSREEYVTLPGSFNFGHTINVKNELLVHDDEKYRWDGSLPKVVAAGSTPDNSGGVGTGAWIPVGINSLSGDGGWSRIGSEFGKSLKEHIQSLPSLSAVKYMTFVEYAALLAGNDTVNHDVKVQQVMDEAHELKCSVYFPTGRYVFDTAVNVWTYVRAVWGDGSAIITRRYGSQFSSPGVIDPAHDTRKLFRMMGGALGPQSIHGLIIDGNARSFTVPKHTDPDQTYPNQTYYGDVEPVDVGPYVFGPEGNTSVPGASYYNHDKKESGLTVFDMVFKDQPGGGVVGNGQNIRVFGNHFMGWYDHAVYIAGSNFASEGDGILCSDIVVTGNVFRNRINNRGNGAVKARFGVNRYAVTGNSFDIVDYCMAFEMGNGPATQPFGQIVVDGNVCTSDGMFMQIGNDIGTEWFSTNWLKSMTITNNTARSLDRIFLLGVSGSSSYIMDGFSVQVANNRFYAPSFLSVYTFMTNTEWMLNNNIVEITGTAMITGVDQSNINNSRIYLKDNVLGVLRTDVQGYAAVSNFQQVEISNNTLRNLYFQIGSYTTDLSIKGNTVNYTSALSSKNLALMYSSAGNGLITADISDNKFFGGVGRCQLKFSSSASLDCINNKFFTTSAPFLELHPAGYTPRVVRIKDNLMRGTGVLLAPLASGVSLSGAGNYMVISGNTLMANNPSAPENITLYQDTGAQSWVAHYETIRCVRNDFKSALLAINATGTAQSGLSTTNKFWFGDNATINTTVVCTYPAGNKANTDITQTVSV
Physico‐chemical
properties
protein length:846 AA
molecular weight: 91471,24820 Da
isoelectric point:5,49317
aromaticity:0,10520
hydropathy:-0,11962

Domains

Domains [InterPro]
G3DSA:3.30.2020.50
ATT
1–94
G3DSA:3.30.2020.50 G3DSA:2.10.10.80 IPR011050
DC_0369
STR
1–597
DC_0369
IPR040775
RBD
90–155
IPR040775
YP_004327543.1
1 846
Architecture
ATT
STR
ATT 1-161 | STR 162-597 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_004327543.1
1 846
Domain Start End Length (AA) Confidence
N-terminal 1 208 208 0,9927
Central domain 209 820 613 0,9788
C-terminal 821 846 25 0,7871
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-208
Central
209-820
C-terminal
821-846

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage Vi01
[NCBI] 		2991283 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella enterica subsp. enterica serovar Typhi
[NCBI] 		90370 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Salmonella

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_004327543.1 [NCBI]
Genbank nucleotide accession
NC_015296.1 [NCBI]
CDS location
range 124070 -> 126610
strand -
CDS
ATGATTTCTCAATTCAATCAGCCACACGGCTCCACTTCAATATTTGTTAACAAACAATCTATTGCTCTGAATTTCGGTGTCACCCAAGATGAAGTTGTTTATTTCGCTGCTGGTATTGACCTCAGTGGATACAAAGTAATCTATGATGAATCGACTCAACGGGCTTATTCTCTCCCTTCCGGTATTGTTTCAGGGACAACTGCAATTAGTCTGGATGAAAGAGCCGTCCTCACTCATTCCGCTGGTTCTGTTGACCTTGGGGAATTAGCAGTAAGCCGCGAAGAATATGTGACTTTACCTGGTTCTTTTAATTTCGGCCATACCATTAATGTGAAAAATGAACTTCTTGTTCACGATGATGAAAAATATCGATGGGATGGTTCTTTGCCAAAGGTAGTTGCCGCTGGTTCTACACCCGATAACTCAGGCGGTGTTGGCACAGGCGCGTGGATACCTGTTGGCATTAATTCTTTGTCTGGCGATGGTGGTTGGTCACGAATAGGATCCGAATTTGGTAAATCTTTGAAAGAACATATTCAAAGTCTTCCCAGCTTGTCTGCCGTCAAATATATGACATTTGTTGAATACGCAGCCCTTTTGGCAGGAAACGACACGGTCAATCATGACGTTAAAGTTCAGCAAGTTATGGATGAAGCGCATGAATTGAAATGCTCTGTTTATTTTCCAACAGGGCGTTATGTATTTGACACAGCAGTCAATGTTTGGACATACGTTCGCGCTGTTTGGGGAGACGGTTCGGCCATTATCACCAGACGTTATGGAAGTCAGTTTAGTTCCCCTGGGGTGATAGATCCGGCGCATGATACGCGTAAATTATTCCGAATGATGGGCGGGGCGTTGGGACCGCAGTCTATTCATGGGCTTATTATTGATGGTAATGCGCGTTCATTTACAGTCCCCAAACATACTGATCCGGATCAAACTTATCCCAACCAAACTTATTATGGCGATGTTGAACCAGTCGATGTTGGCCCATATGTATTTGGACCGGAAGGGAATACTTCTGTTCCTGGCGCTTCTTACTATAACCATGATAAGAAAGAATCCGGTCTGACCGTTTTCGATATGGTGTTTAAAGATCAACCTGGTGGTGGTGTCGTTGGTAATGGCCAAAACATCCGCGTGTTTGGAAATCACTTTATGGGTTGGTATGACCATGCTGTGTATATCGCTGGAAGTAACTTTGCCTCGGAAGGAGACGGAATTTTGTGTAGTGATATTGTTGTCACTGGTAACGTATTCCGAAATCGTATTAACAATCGAGGCAATGGAGCAGTCAAAGCACGATTTGGTGTTAATCGTTATGCAGTTACAGGCAACTCCTTTGATATAGTTGACTATTGCATGGCATTTGAGATGGGTAACGGACCAGCGACTCAACCATTTGGCCAAATTGTTGTGGACGGTAACGTGTGCACTTCAGATGGTATGTTTATGCAAATCGGGAATGATATTGGGACTGAGTGGTTCTCGACCAATTGGCTCAAATCAATGACTATTACGAATAACACAGCACGGTCGTTGGATCGCATTTTCTTGTTAGGGGTTAGCGGATCTTCCAGTTATATTATGGATGGGTTTTCTGTACAAGTGGCCAATAACCGATTTTATGCGCCGTCATTTTTGTCCGTGTACACATTCATGACGAATACGGAATGGATGTTGAATAACAATATCGTGGAGATCACAGGAACTGCTATGATCACAGGAGTTGATCAATCGAACATCAACAATTCACGGATATATCTTAAAGATAATGTTTTAGGAGTTCTCCGGACTGATGTTCAAGGTTATGCTGCAGTCAGTAATTTTCAACAAGTTGAAATTTCTAATAATACATTGCGTAATTTGTATTTCCAAATAGGAAGTTATACCACAGATCTGTCTATTAAAGGAAATACTGTTAACTACACATCTGCATTATCCAGTAAAAACTTGGCGCTCATGTATTCAAGTGCTGGGAATGGTTTGATAACAGCCGATATCAGTGATAATAAGTTTTTCGGTGGAGTTGGTCGTTGCCAACTTAAATTCAGTAGCAGCGCTTCTCTGGATTGTATTAACAACAAATTCTTTACAACTTCGGCACCGTTTTTGGAATTGCATCCGGCTGGTTATACTCCACGCGTCGTTCGTATAAAGGACAATTTAATGCGTGGTACAGGCGTATTGCTGGCTCCTCTTGCTTCTGGTGTTTCTTTGTCCGGCGCTGGGAATTATATGGTAATTTCGGGCAACACGTTGATGGCTAATAACCCATCTGCGCCCGAAAATATAACTTTGTATCAGGACACAGGTGCGCAGAGTTGGGTGGCCCATTATGAAACTATCAGATGTGTTCGAAATGATTTCAAATCTGCGCTGTTGGCGATTAATGCAACAGGGACAGCACAATCTGGTTTGAGCACTACCAATAAATTCTGGTTCGGGGATAACGCGACGATCAATACCACGGTTGTTTGTACTTATCCTGCTGGCAACAAAGCCAACACCGATATCACTCAGACAGTTTCAGTTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
6e00ab3473ec183c948a6322524b84079106c4c8f122a9224671f3ec74b94d8f
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6583
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50