Protein

View in Explore
Genbank accession
XJP07739.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MIAKVLSWTAKAFSGDVEADPGGGAVVRSQLAAPSGTDAPPLPGDFAVLVHTQGAGRTVQVGSFDSLNAPIAAAGEHRIYARDAEGAPIVSLHIKKDGSAILSNAEGSATLGADGSHTLTKGNASVVVAADESLSMRNGSGGVRVAAGGEVTINGVKFSTSGAVEAPGLVKGLDFTATNVNVTLSTHTHNTGAIPKPDPGT
Physico‐chemical
properties
protein length:201 AA
molecular weight: 19902,92830 Da
isoelectric point:5,81101
aromaticity:0,03483
hydropathy:0,03035

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XJP07739.1
1 201
Domain Start End Length (AA) Confidence
N-terminal 1 76 76 0,7777
Central domain 77 190 115 0,0295
C-terminal 191 201 10 0,9969
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-76
Central
77-190
C-terminal
191-201

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudoalteromonas phage vB_Psp_PY6
[NCBI] 		3374930 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudoalteromonas sp.
[NCBI] 		53249 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Alteromonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XJP07739.1 [NCBI]
Genbank nucleotide accession
PP806536 [NCBI]
CDS location
range 25102 -> 25707
strand -
CDS
ATGATCGCAAAAGTATTAAGTTGGACGGCGAAAGCGTTCAGCGGTGACGTAGAGGCGGACCCCGGCGGCGGCGCTGTGGTGCGTAGTCAATTAGCCGCACCGAGCGGAACGGACGCCCCGCCACTGCCGGGCGACTTCGCGGTACTAGTCCACACACAGGGCGCAGGGCGCACCGTACAGGTCGGCAGTTTTGACAGCCTGAACGCGCCGATAGCGGCCGCCGGCGAACATCGGATCTACGCACGGGACGCGGAAGGCGCGCCGATCGTATCACTTCATATCAAAAAGGACGGTTCGGCCATACTGTCGAACGCGGAAGGGTCGGCAACGCTCGGCGCTGACGGGAGCCACACACTAACGAAAGGCAACGCGTCGGTAGTTGTAGCGGCCGACGAGTCGCTAAGCATGAGAAACGGCTCGGGCGGGGTGCGGGTGGCTGCCGGCGGCGAAGTGACGATCAACGGCGTCAAGTTCAGCACGTCGGGCGCAGTCGAGGCCCCTGGACTAGTAAAAGGCCTAGACTTTACCGCTACAAACGTAAATGTAACGCTGAGCACCCACACGCACAACACGGGCGCCATACCAAAACCAGATCCGGGAACATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
20aafd504a3803e59853f89edbc58d5210d87d208c922e62605ed0c79670d21a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7914
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization of bacteriophages from antarctic seawater Rojas,N., Araneda,D., Bastias,R., Olivares,J., Plaza,N., Katharios,P., Garcia,K., Alcaman,M.E. and Higuera,G. 2009-01 — GenBank