Protein

View in Explore
Genbank accession
XYA28892.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,81
TSP
Evidence RBPdetect2
Probability 0,90
Protein sequence
MGYFQMTRNVEEIFGGVVVAPHQIPFKYTSTNGGETFLSLPFYPITGFVTINGGVQVPLDNFEIDRNTLNLGRELEAGDVVFCLFDKIMSPQDASNSAVRIYKFLSVGGETEFTPDFTTYGVQSLYIDGKYKTPGEDYNYFKTSGKVVLDAALPTGVWVVAEMSIKQNIPALAGNNGASEIGTETGKTVQETLDGIGYNLASVEKLMTDVTDMSPVHTHGFYKSMDGGHGDWYKTGNTDLTKAGTHDVTKALVYNAKGTEYALNVAVDKISVLANGAKGYDYADCIDKTTDDFVCLGQVINGIESHLTLGVSIANNIDTYDGGKRLNIIVPTDGYRIGKEAAKLYSGVAYKLNAARIFVFAGASYQYSITGKRLNGFQHGVDEITEKWEAVNRGIYWGSVSLQNTSIHGGTLFGDHTIRSLRDDCSSGLGVLVLNPEGFSTHNLTIRETFMWAMVETTAEVEATEFNRNGHAFDNDSIDYKYIVDAWVNAGITSRFGNFNRTTHYNSKFMGGRRGTYRNGCDWSGLYNCEVTNRLAWRNAANVSGEIPEYIAVCTGTALDVSGGYWGPAAAKDYNARYGTVYSTAQNHSFKAVYTEWTYNFITISAWGFNGKASRLQGLHLDVVSVYKDNFMDYSQIRFEGGCFGTIDDGGNYTYPAGFTHYDTPNGQTQFSYGTPVRDIGAFRHTGFDFKYGPYNMYLTAGTDWDSWRDRPYAKEMFNPYGMQINSGTAFLPWQIPAIKSMVCFWIKDLTGNFDPRNIVAWITAASQDGSANTDEALYKSFAEKVVDFGNGYKMLMLAQKRLSAWDGQYTFARNANITITVPAETPIVLKAVEAYTGGIPIFPNGCGNYTPESNGASILSPVTNQVGLDGSLGGGLFFNGDIIGPWVHMRRTASGYRYVPSLTAGYTLSRKMVTGGYALDAAYKVAFNATITAVNSNNTTIVEVPTAQLPYIAVGIPLYVTGGSSTSATGTFHLIKRIANADGTSSARYLVQGVLGAVGDVLTVDQNQLSSYTFFNDMNYNALTAATLVLTGTSQATAHRSSVSAGIGYNGASGTKAMEWYFNGGTTPSHRLVATTVSGMTLEAGGNFSVVGNTFPSADGTYSLGTSSSRWTQVFATNSTIATSNRDKKTNIRQITPVEVSAFYEIAMLNSVWQWMEKYQVEGDDARLHSGPTVQDAIEIMDKYGLDWTKYSAFCYDKWDARDAVIETWDAEYETIPGTPAEYDEEGKLIVEAVPEVKVLVREAGSKVIEPALEAGEDYAFRKEELLFWITRAIVQKQKDIEIRLSDLESKFK
Physico‐chemical
properties
protein length:1294 AA
molecular weight: 141788,83710 Da
isoelectric point:5,20528
aromaticity:0,12210
hydropathy:-0,22566

Domains

Domains [InterPro]
DC_0063
STR
1–730
DC_0063 IPR036388
IPR030392
CHP
1125–1186
IPR030392
IPR030392
CHP
1125–1293
IPR030392
cd10144
CHP
1125–1278
cd10144
XYA28892.1
1 1294
Architecture
STR
RBD
STR 1-730 | RBD 1111-1293 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XYA28892.1
1 1294
Domain Start End Length (AA) Confidence
N-terminal 1 278 278 0,9812
Central domain 279 1020 743 0,9849
C-terminal 1021 1294 273 0,9360
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-278
Central
279-1020
C-terminal
1021-1294

Taxonomy

  Name Taxonomy ID Lineage
Phage Klebsiella phage vB_KpnM-Zahir
[NCBI] 		3447921 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Klebsiella pneumoniae
[NCBI] 		573 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XYA28892.1 [NCBI]
Genbank nucleotide accession
PV891800.1 [NCBI]
CDS location
range 13777 -> 17661
strand +
CDS
ATGGGGTATTTTCAAATGACCAGAAACGTAGAAGAAATTTTCGGTGGGGTAGTCGTAGCACCACATCAGATCCCGTTCAAGTACACTTCAACAAACGGTGGGGAAACTTTCCTTTCCCTGCCATTTTATCCAATCACCGGGTTCGTTACTATCAACGGTGGTGTGCAGGTTCCTCTTGATAATTTCGAAATAGACAGGAATACATTAAATCTTGGCCGCGAACTGGAAGCCGGGGATGTTGTATTCTGTCTGTTTGATAAAATCATGTCTCCTCAAGATGCGAGCAATAGTGCAGTTCGTATCTACAAATTCCTTTCTGTCGGCGGTGAAACAGAATTTACTCCTGATTTCACAACTTATGGTGTACAGTCTTTGTACATAGACGGAAAATACAAAACGCCCGGTGAAGATTACAATTATTTCAAAACTTCAGGTAAGGTTGTTCTTGATGCAGCATTACCAACAGGTGTTTGGGTCGTTGCCGAGATGTCAATTAAGCAAAATATCCCGGCGCTGGCTGGCAACAATGGTGCAAGTGAAATTGGTACAGAAACCGGCAAGACTGTTCAAGAGACTCTGGATGGCATCGGTTATAACTTGGCTTCCGTAGAAAAACTGATGACAGATGTAACAGATATGTCACCAGTACACACTCATGGTTTCTATAAGAGTATGGATGGTGGGCATGGTGACTGGTATAAGACAGGTAATACTGATCTGACCAAAGCTGGTACACATGACGTAACTAAAGCCTTGGTTTATAATGCCAAAGGCACAGAATATGCTTTAAATGTTGCTGTGGATAAAATTAGTGTCTTAGCTAATGGTGCTAAGGGTTACGACTATGCCGACTGTATTGATAAGACTACGGATGACTTTGTATGTTTAGGGCAAGTCATCAATGGCATTGAATCTCATCTCACACTTGGCGTATCTATTGCTAATAACATCGACACTTACGATGGAGGCAAGCGTCTTAATATTATTGTACCTACCGACGGATACCGTATAGGTAAAGAAGCTGCCAAGCTGTACTCCGGCGTAGCTTATAAATTGAATGCTGCTCGCATATTTGTATTTGCTGGGGCATCCTATCAATACTCCATCACCGGCAAACGTTTGAATGGCTTCCAGCACGGTGTAGATGAGATCACCGAGAAATGGGAAGCCGTGAACAGGGGTATTTATTGGGGTTCAGTTAGCTTACAGAACACGTCCATCCACGGAGGTACTCTATTCGGGGACCATACGATTAGGTCACTTAGAGACGACTGCTCCTCTGGTCTAGGTGTGCTGGTTCTGAACCCAGAAGGATTCTCTACGCATAACCTGACAATTCGGGAAACGTTCATGTGGGCTATGGTGGAAACGACTGCCGAGGTAGAAGCCACTGAGTTTAACCGGAACGGGCATGCGTTCGATAACGATAGTATTGACTATAAATACATAGTTGATGCTTGGGTTAATGCTGGTATTACTTCCCGCTTTGGCAACTTTAACCGCACCACCCACTATAACAGTAAGTTCATGGGGGGCCGCCGTGGTACATATCGCAATGGCTGCGACTGGTCTGGTTTATATAACTGTGAAGTAACAAACCGTCTGGCATGGCGTAATGCAGCTAACGTATCTGGAGAAATACCAGAATATATTGCTGTTTGCACAGGCACAGCACTAGATGTATCCGGAGGCTATTGGGGACCAGCAGCAGCAAAAGATTATAATGCTCGCTATGGTACCGTTTACTCCACTGCACAGAACCACTCATTTAAGGCGGTGTATACAGAGTGGACTTACAACTTCATCACTATTAGTGCATGGGGCTTCAATGGTAAGGCATCCCGTCTACAGGGACTTCATCTCGATGTTGTCAGTGTATATAAAGATAACTTCATGGATTATTCACAAATCCGATTTGAAGGCGGCTGCTTTGGTACTATTGACGACGGCGGTAATTATACCTACCCGGCTGGGTTTACTCACTATGATACCCCCAACGGGCAAACACAGTTTTCTTACGGTACCCCTGTAAGAGATATTGGAGCATTCCGCCACACTGGGTTCGACTTTAAGTATGGCCCTTACAATATGTACCTTACTGCCGGCACTGACTGGGATTCCTGGCGTGACCGTCCGTATGCCAAAGAGATGTTCAACCCATACGGCATGCAGATTAACAGCGGAACCGCGTTCTTGCCTTGGCAGATTCCTGCAATTAAGTCTATGGTTTGCTTCTGGATTAAGGACTTAACAGGCAACTTCGACCCACGAAATATTGTGGCGTGGATTACTGCTGCAAGTCAGGACGGCTCGGCAAACACCGACGAAGCATTGTATAAATCCTTTGCTGAGAAGGTCGTGGACTTTGGTAATGGTTACAAGATGCTTATGCTGGCACAGAAGCGCCTCAGTGCGTGGGACGGCCAGTATACATTTGCTCGTAATGCCAACATCACCATAACTGTACCAGCTGAGACTCCGATTGTTCTCAAGGCTGTGGAAGCATACACCGGTGGCATTCCTATATTCCCTAACGGGTGCGGAAACTACACTCCGGAATCTAACGGTGCAAGTATCCTGAGTCCTGTGACCAATCAGGTTGGTTTGGATGGTTCCCTGGGTGGTGGCCTGTTCTTTAACGGGGACATCATTGGGCCTTGGGTGCATATGCGTCGTACTGCTTCTGGGTACCGCTACGTACCATCCCTAACCGCTGGCTATACGCTTTCTAGGAAGATGGTGACTGGGGGCTACGCGCTGGATGCCGCGTACAAGGTGGCGTTCAACGCTACAATTACGGCGGTAAACTCCAACAACACCACTATAGTTGAGGTCCCAACTGCTCAGTTACCGTATATCGCAGTAGGTATTCCGCTTTACGTTACCGGCGGTTCGTCTACGTCTGCTACTGGAACTTTCCATCTCATCAAGCGTATTGCTAATGCAGATGGAACCAGCTCTGCACGGTATTTGGTGCAAGGTGTATTGGGTGCTGTTGGTGATGTTCTCACCGTAGACCAAAACCAGCTGTCAAGTTATACGTTCTTTAATGACATGAACTATAACGCCCTGACTGCCGCTACTTTAGTACTTACGGGGACCTCACAAGCTACCGCCCACCGCTCCAGTGTATCTGCTGGGATAGGTTATAACGGAGCCAGTGGCACTAAGGCGATGGAATGGTACTTCAATGGTGGTACTACTCCATCGCACAGACTGGTTGCTACGACAGTATCCGGTATGACTCTAGAGGCGGGTGGTAATTTTTCAGTAGTCGGGAATACGTTCCCATCTGCTGATGGCACCTATTCTTTGGGTACATCGTCTAGTCGCTGGACTCAGGTGTTTGCAACTAACAGTACCATTGCAACATCAAACCGCGATAAAAAGACAAACATACGCCAGATTACCCCTGTTGAGGTATCAGCATTCTATGAAATAGCTATGCTCAACTCTGTATGGCAATGGATGGAAAAATACCAGGTTGAGGGTGATGATGCTCGACTTCATAGTGGGCCAACCGTACAGGACGCCATTGAAATTATGGATAAGTACGGTTTGGATTGGACGAAGTATTCGGCATTCTGTTATGACAAATGGGATGCACGGGATGCTGTCATAGAAACATGGGATGCAGAGTATGAGACTATCCCAGGCACTCCTGCCGAATATGATGAGGAAGGGAAACTCATTGTTGAGGCGGTTCCTGAAGTCAAAGTGCTGGTGCGTGAGGCAGGCAGTAAAGTAATAGAACCGGCACTGGAAGCCGGAGAAGATTATGCATTCCGTAAAGAGGAATTACTGTTCTGGATAACCAGAGCTATAGTTCAAAAACAAAAAGACATCGAAATTAGATTATCTGATTTAGAAAGTAAATTTAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
8df75073646e8ba060d7990255eef3dfdc3e90cb4d39b7d773f200b2543fce74
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,8195
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and Genomic Analysis of Seven Phages Active Against Carbapenem-Resistant Klebsiella pneumoniae Cuello,L., Supandy,A., Van Tyne,D., Patel,R. and Parmar,K. — — GenBank