Protein

View in Explore
Genbank accession
YP_010078362.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 0,95
TF
Evidence RBPdetect
Probability 0,82
TF
Evidence RBPdetect2
Probability 0,87
Protein sequence
MTESLNSRVAKFDEIVTNVDTWVKGGSADTVDFGGGPVDSPAKLIEGQRTDIAAAAAALISQKDEQINQQANGVLAQANAAASNANGSAGAAAASAASAAASASASAASAADAAASSAQKFVTSAGAANQKPNTSYTYINPLSRVCTITGGGDGSNFQVIGYGHNRQKFLGAATTGVWNYLPANGIANLSFYKKAGDGTRTKLTYTSGAPTGNQWTGVVGASSVSWTLGTALGVLEQLYIEDPYAVIATTGTQPDYSWIGGGYDNVVDRGVMQHVTGAHNRVLDGDHTTMLGGSYHINDGGSYNAFCGGTDNWNGSGATLGSGHFGGLRNYCNGATSGTTFAQSCKVNSAYSWTHGYLNTINGTACSVGGRNNTASGSDSAVFGNGNTSTANYSFAIGNGNTVGHHYARSLGGYKGSTLYQGELLVWAYRDTSVGTNPFVSRRQVPLSAVTSTVSSSYLATLDNITGISLPASTAWKCTLEVWARSTALRSAAWELKFRAHTDASGNLTIGTVTTVWSDVDANFGTGANVATVSVAVSSNQLNFVIQPRIDSPVGAKWGAVLHINEVN
Physico‐chemical
properties
protein length:568 AA
molecular weight: 58352,24740 Da
isoelectric point:6,40481
aromaticity:0,08627
hydropathy:-0,14542

Domains

Domains [InterPro]
DC_0261
STR
1–317
DC_0261 DC_0296
IPR011049
STR
315–457
IPR011049
IPR011049
STR
315–465
IPR011049
YP_010078362.1
1 568
Architecture
STR
RBD
STR 1-465 | RBD 466-568
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010078362.1
1 568
Domain Start End Length (AA) Confidence
N-terminal 1 123 123 0,9800
Central domain 124 403 281 0,8608
C-terminal 404 568 164 0,9812
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-123
Central
124-403
C-terminal
404-568

Taxonomy

  Name Taxonomy ID Lineage
Phage Ralstonia phage Gamede
[NCBI] 		2759726 Uroviricota > Caudoviricetes > Cimandefvirus >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010078362.1 [NCBI]
Genbank nucleotide accession
NC_054958.1 [NCBI]
CDS location
range 20596 -> 22302
strand +
CDS
GTGACCGAATCACTGAACAGCCGCGTCGCCAAGTTCGACGAGATCGTCACCAACGTTGACACGTGGGTGAAGGGCGGGAGCGCCGACACCGTTGATTTCGGTGGCGGCCCGGTCGATTCGCCCGCAAAGCTCATCGAGGGCCAGCGAACAGACATCGCTGCTGCTGCTGCGGCGCTGATCTCGCAGAAGGACGAGCAGATCAATCAGCAGGCGAACGGCGTGCTGGCGCAGGCGAACGCGGCGGCCAGCAATGCAAACGGAAGCGCTGGCGCGGCGGCGGCGAGTGCGGCGAGTGCGGCGGCATCTGCCTCCGCCAGCGCCGCCAGCGCAGCAGATGCCGCAGCATCGTCGGCCCAGAAGTTCGTGACGTCGGCCGGTGCGGCGAACCAGAAGCCGAACACGTCCTACACCTACATCAATCCGCTGTCGCGCGTGTGCACCATCACCGGCGGCGGAGACGGCTCGAACTTCCAGGTGATCGGATACGGCCACAACCGCCAGAAGTTTCTGGGCGCGGCCACTACTGGCGTCTGGAACTACCTGCCTGCCAATGGCATTGCCAACCTGTCTTTCTACAAGAAAGCGGGAGATGGCACCCGCACAAAGCTGACGTACACGTCCGGCGCTCCGACCGGAAACCAGTGGACAGGCGTTGTTGGTGCAAGCAGCGTCTCCTGGACGCTCGGCACAGCCCTTGGCGTGTTGGAGCAGCTGTACATCGAAGACCCGTACGCGGTGATCGCGACGACAGGCACGCAGCCGGACTACTCCTGGATCGGCGGCGGCTACGACAATGTGGTGGATAGAGGGGTGATGCAACACGTCACGGGCGCGCATAACCGCGTCCTGGATGGCGACCACACCACGATGCTGGGCGGAAGCTACCACATCAACGACGGCGGAAGCTACAACGCATTCTGCGGTGGCACCGACAACTGGAATGGATCGGGCGCTACGCTGGGCAGCGGGCACTTCGGCGGGCTGCGCAACTATTGCAACGGCGCCACCTCTGGCACGACGTTCGCGCAGTCCTGTAAGGTGAACTCGGCGTACAGCTGGACGCACGGTTACCTGAACACCATCAACGGCACGGCATGCTCGGTCGGCGGGCGAAACAACACCGCGTCCGGCTCGGATTCTGCCGTCTTCGGCAACGGCAACACCAGCACCGCGAACTACTCGTTCGCCATCGGGAACGGCAACACGGTCGGCCATCACTACGCCCGCAGTCTGGGCGGGTACAAGGGCAGCACGCTGTATCAGGGTGAGCTGCTGGTCTGGGCGTACCGCGACACGTCGGTCGGCACGAACCCGTTCGTGAGCCGCCGGCAGGTCCCGCTGTCCGCAGTGACCTCTACTGTCAGCTCGTCCTACCTCGCCACGCTCGACAACATTACTGGCATCAGTCTTCCAGCCAGCACGGCATGGAAATGCACCCTGGAGGTATGGGCGCGCAGCACGGCGCTGAGGTCAGCGGCCTGGGAGCTGAAATTCCGAGCGCACACAGATGCCTCCGGCAACTTGACGATCGGCACTGTGACCACGGTGTGGTCCGACGTTGATGCGAACTTCGGCACGGGCGCCAACGTAGCGACGGTTTCTGTAGCGGTATCGAGCAATCAGCTCAATTTCGTGATCCAGCCACGGATCGATTCTCCTGTCGGCGCAAAGTGGGGTGCCGTGTTGCACATCAACGAGGTGAACTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
867e4942ca32f3185db20eec5a5dfb855a62314daf527aefe347f8715faf9ff8
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7785
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Ralstonia phages Trotereau,A., Boyer,C. and Torres-Barcelo,C. 2021-03-08 — GenBank