Protein

View in Explore
Genbank accession
YP_008126579.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 0,97
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MTLAGAEAQTRMERIEPQKKKQLLTSLMEPIRAKAGDAIRIEKQLTTGDERTNNPADLTGETVRVYIQFGEETLVANQEVEYVDRASGKVAVELSPSQTSNIGRHNIEWVVDPQGDPTTFPDSDYDILRTVSPLDRELTPSEETPPDLTVTNLTVNDTATVGTLDAGSVNAEQVRFAQNNTGFSGRVGDRPIVSEQARTINVGTDVSSIQEAVNEIPLLLRHRYKINVESGTYSEDLLIPPFMVADTSGEDSAGNVEGATHNPRITGDTATPSNVEVSSITTTGVQGAIAPLIEGFNVTGDTPYDDESTGIQLFGCQNVSLRAISWAGSSASRGVYAYGSTVTVRNCDFGSTDLDYGVASKHNSSIHVDSFGSNPTTGTVNSHVFRVDDASVLSAKAVGATGNSGYVENANGLAHNADWNAFEPVVGLRYNISSNQTVSTKDTGGVQTVQFDDEGYDRHGRWDTSNYKLSIPVDGVYRIEASLHWDSPSAGTEWRVIINEPTGRGIISRSRGLFDGNAFETTYVADTHKMNAGQEIEIQTRHDEGSDLTINQYEPSTYVTVRREN
Physico‐chemical
properties
protein length:565 AA
molecular weight: 61155,08990 Da
isoelectric point:4,61552
aromaticity:0,06549
hydropathy:-0,48761

Domains

Domains [InterPro]
IPR012334
STR
158–418
IPR012334 DC_2277
IPR011050
STR
195–365
IPR011050 IPR008983
IPR011050
STR
197–372
IPR011050
YP_008126579.1
1 565
Architecture
STR
RBD
STR 158-418 | RBD 425-565
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_008126579.1
1 565
Domain Start End Length (AA) Confidence
N-terminal 1 221 221 0,9347
Central domain 222 420 200 0,8901
C-terminal 421 565 144 0,9917
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-221
Central
222-420
C-terminal
421-565

Taxonomy

  Name Taxonomy ID Lineage
Phage Halorubrum virus CGphi46
[NCBI] 		754066 Uroviricota > Caudoviricetes > Kirjokansivirales > Seejivirus > Seejivirus salhabitans
Host Halorubrum
[NCBI] 		56688 Archaea > Euryarchaeota > Halobacteria > Haloferacales > Haloferacaceae >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_008126579.1 [NCBI]
Genbank nucleotide accession
NC_021537 [NCBI]
CDS location
range 26539 -> 28236
strand -
CDS
ATGACGCTCGCCGGGGCCGAGGCCCAGACCCGGATGGAACGAATCGAGCCGCAGAAAAAAAAACAGCTTTTGACGTCACTAATGGAACCAATCAGAGCCAAGGCAGGCGACGCGATCCGTATCGAGAAGCAACTCACCACTGGAGACGAGCGCACGAACAACCCAGCCGATTTGACTGGCGAGACGGTGCGGGTTTATATTCAGTTCGGAGAAGAGACACTCGTCGCAAATCAGGAGGTGGAGTACGTCGATCGCGCGAGCGGGAAGGTCGCTGTTGAGCTGTCGCCGTCACAGACGTCAAACATCGGGAGGCACAATATCGAGTGGGTTGTTGACCCGCAGGGCGACCCCACAACGTTCCCCGATAGCGACTACGACATCCTGCGGACGGTCAGCCCGCTCGACCGCGAACTGACGCCAAGCGAGGAGACGCCGCCAGACCTGACCGTCACCAATCTGACAGTCAACGACACGGCGACAGTCGGCACGCTCGACGCCGGATCGGTCAATGCAGAGCAAGTACGTTTCGCACAGAACAATACTGGATTTTCTGGACGTGTTGGCGACCGCCCCATCGTCTCCGAACAGGCCAGGACCATCAACGTGGGGACGGACGTAAGTAGTATACAAGAAGCCGTCAATGAGATACCGCTACTGCTGCGCCATCGCTATAAAATCAATGTCGAAAGCGGCACGTACAGCGAGGATCTGCTTATCCCGCCGTTCATGGTGGCCGATACGTCAGGCGAAGACTCAGCAGGAAATGTAGAGGGAGCAACTCATAACCCGCGGATAACGGGAGATACGGCCACTCCCTCAAACGTCGAAGTCTCATCTATCACAACTACGGGAGTTCAGGGGGCAATCGCTCCACTGATTGAGGGCTTCAATGTGACAGGGGATACCCCCTACGACGATGAATCAACGGGGATACAACTTTTCGGATGTCAAAATGTCTCGCTGCGTGCGATCTCTTGGGCAGGAAGCTCTGCCTCTCGGGGCGTGTACGCCTACGGCAGTACCGTAACTGTTCGGAATTGTGACTTTGGCTCAACCGACCTTGATTACGGCGTCGCATCAAAACACAATAGTTCTATACACGTCGATTCTTTTGGGTCAAACCCAACCACGGGGACTGTAAACAGCCATGTATTCCGCGTAGATGATGCGTCGGTCCTGAGTGCAAAGGCGGTTGGCGCAACGGGTAACAGCGGGTACGTCGAAAACGCAAACGGGTTGGCCCATAATGCTGACTGGAACGCCTTTGAACCTGTGGTCGGCCTGCGATATAATATCTCATCGAATCAGACCGTATCAACGAAGGATACAGGGGGAGTTCAGACAGTTCAATTTGACGACGAGGGTTATGATCGCCATGGCAGGTGGGATACGTCTAATTATAAGCTATCTATTCCTGTTGATGGGGTTTATCGCATTGAGGCATCGCTCCATTGGGACTCGCCATCCGCAGGGACGGAGTGGCGAGTTATCATCAACGAGCCTACAGGGCGAGGGATTATATCGCGGAGTCGAGGGTTGTTTGACGGCAACGCATTCGAGACGACTTACGTTGCTGATACGCATAAAATGAATGCAGGCCAAGAGATTGAAATACAGACGCGGCATGATGAAGGGTCGGACTTAACCATTAACCAATATGAGCCATCGACGTACGTAACAGTTCGTCGGGAAAACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
88a8756a075e5cee83433b0f912c67db711f1def764118fd72846eed10b6d3ea
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7658
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Halorubrum phage CGphi46 Henn,M.R., Dillon,J., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Fitzgerald,M.F., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Neiman,D., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank