Protein

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Genbank accession
YP_013605663.1 [GenBank]
Protein name
receptor-binding protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,87
Protein sequence
MGFFAGKYSDGKTVLSLNTESGGDINRHYSPNANSIFHSDMPFVLVDGTYEAGLGNAGNGFFVCQMPSDIINIKSNDPGRVILTAIEINGTHRAFLNGTQSQVGQFTAFFEDPPIGRAGAEVGLTSAFASGNSLAHGTYIYNSGLGHEESIARQGTGGTISQASGFNLYRPGGAYAGEAIGRAWTLAGFPAGASTVPIDGGNADYWHPNWQAPIGAAYRGHNWFYVCNSNIRGYVGKKGTVPANVNLLYQSPTYPDKVYICKGSTSNLAAQAAKKVYVQDGYNITPTKVIWYVLNLRYSNGNMGVSGNPFTGSDILITPSNFTIKGVSLPNTGYKFINQNAFGNLGYRPDMEYVGNNAAYTGAFGDTTARCEIVGSSNGSLWSPVDYGGAKSQISIYKFGAGKQWYVNSSNNTIGNEHGAVWSPSTVPLRLFPNNVASTYVGDDITPTYPGAGNYYRALATIGLGLPNANATVILTTEVIMGNINTAGGAIRTYGGVAWQVQGRRQHSYTEGDGIFHQILTLPPGYLVPYHSTTAYSYTQTWASRPDELTFRRNGYIYTIKNLGNGNAELGVVIHADEAAAIFLPRLRVTVQRLT
Physico‐chemical
properties
protein length:595 AA
molecular weight: 63736,25020 Da
isoelectric point:8,39541
aromaticity:0,11933
hydropathy:-0,21059

Domains

Domains [InterPro]
IPR059609
RBD
1–595
IPR059609
YP_013605663.1
1 595
Architecture
RBD
RBD 1-595
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_013605663.1
1 595
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,0921
Central domain 11 209 200 0,6107
C-terminal 210 595 385 0,8684
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-209
C-terminal
210-595

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage vB_Sen-E22
[NCBI] 		2768772 Uroviricota > Caudoviricetes > Demerecviridae > Tequintavirus > Tequintavirus E22
Host Salmonella enteritidis
[NCBI] 		149539 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_013605663.1 [NCBI]
Genbank nucleotide accession
NC_134262 [NCBI]
CDS location
range 46362 -> 48149
strand +
CDS
ATGGGTTTTTTCGCTGGAAAATATAGCGATGGTAAGACCGTACTATCTTTAAATACTGAATCTGGTGGTGACATTAATCGTCACTATAGTCCAAATGCCAATAGTATTTTTCATAGTGATATGCCATTTGTCCTAGTTGACGGTACTTATGAAGCTGGGTTAGGTAATGCCGGAAATGGGTTTTTTGTATGTCAGATGCCCTCTGACATAATAAATATTAAATCCAACGACCCAGGTAGAGTTATACTAACTGCTATTGAGATTAATGGTACTCATAGGGCTTTTCTTAATGGTACTCAATCTCAAGTTGGTCAATTTACTGCATTTTTTGAAGATCCGCCTATTGGTAGGGCAGGTGCAGAAGTAGGTCTTACGTCAGCTTTTGCATCAGGTAATAGTTTAGCACATGGCACCTATATTTATAACTCTGGTTTAGGCCATGAAGAATCAATTGCTAGGCAGGGTACAGGTGGTACCATATCTCAAGCCTCTGGGTTTAATTTATATAGGCCGGGAGGAGCATATGCTGGTGAGGCTATAGGTAGGGCATGGACTTTAGCAGGATTTCCAGCAGGAGCGTCTACAGTACCTATAGATGGTGGTAATGCTGACTACTGGCACCCTAATTGGCAAGCTCCTATAGGAGCCGCCTATAGAGGACATAATTGGTTCTACGTTTGTAACTCTAATATACGAGGTTATGTAGGTAAAAAGGGCACAGTACCGGCTAATGTTAACTTATTGTATCAATCTCCTACTTACCCTGATAAGGTTTATATATGCAAAGGTTCAACATCTAATTTAGCGGCACAAGCCGCTAAGAAAGTATATGTGCAGGATGGCTATAATATTACACCTACCAAAGTTATTTGGTATGTACTTAATCTAAGGTACTCTAATGGTAATATGGGCGTATCTGGTAATCCATTTACTGGGTCAGATATACTTATAACTCCATCTAATTTTACTATAAAAGGGGTTAGTTTACCAAATACTGGATATAAGTTTATCAACCAAAATGCTTTTGGTAACTTAGGCTATAGGCCAGATATGGAATACGTCGGAAATAACGCAGCGTACACTGGAGCCTTCGGGGATACCACTGCGCGTTGTGAAATTGTAGGATCTAGTAACGGATCTTTATGGTCTCCTGTAGATTATGGAGGAGCTAAGTCTCAAATTAGTATTTACAAATTCGGAGCGGGTAAGCAATGGTACGTAAACTCAAGTAATAACACTATAGGTAATGAGCATGGAGCTGTGTGGAGTCCTAGTACTGTACCCTTAAGACTATTTCCTAATAACGTTGCTAGTACCTACGTTGGTGATGACATAACCCCAACGTATCCTGGAGCAGGCAATTATTATAGAGCTTTGGCCACCATAGGATTAGGATTGCCTAATGCTAACGCAACAGTAATATTAACTACTGAAGTTATTATGGGGAATATTAATACCGCAGGAGGAGCTATACGCACATACGGTGGTGTTGCTTGGCAAGTACAAGGAAGAAGACAGCATAGTTACACGGAAGGTGATGGAATATTCCATCAAATATTGACCCTACCTCCTGGATACTTAGTTCCCTACCACTCCACTACTGCATACAGCTATACTCAAACTTGGGCAAGTAGACCTGATGAGTTAACATTTAGAAGAAACGGATATATTTATACTATTAAAAATCTAGGAAATGGTAATGCTGAATTGGGCGTAGTTATTCATGCTGATGAGGCTGCAGCTATCTTCCTACCGAGATTAAGAGTAACAGTTCAACGCCTTACCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
4a1030498eaaff70edd7c33d3af99a1f53f271df07ef660a7e6a3929d1c5fcb7
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,2535
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50