Protein

View in Explore

Genbank accession

ARB06121.1 [GenBank]

Protein name

GTA-like protein

RBP type

Evidence RBPdetect2

Probability 0,56

Protein sequence

MIQAAVTVALGAAYRALTPDTIIQNEEARLEEAKITSASEGATIAQLWGRQRVPGQIIWATKFREVVEVETETQSGGKGGGPDIVTETTTYRYFQSFAVGLCEANGARIRVGRIWADGVELDQSAYTIRFYDGSETQSPDSAIVATEGDAPAFRGLAYLVFDDFEVSDHGNRIPQITVEVTRSLDDDPDRIEEKLEAVTMIPGANEFIYGTRTYYTGGGENSSTENVSQVPDTPDLKVSLDQLEDDVTNIASVELVVSWFGTDLRCGNCEVKPKVDFKEKTVKPVDWRVATETRSSADLVSEYESGKVAFGGTPADVTVREALTEIKGRGHRAVFYPFIMMDIENGNSLPNPYSDNAATTGQPVYPWRGRITCSPAAGYVGSPDKTAAAGTQVASFVGTAAAGDFGTWNGTNVPYTGPSEWSFRRMVLHYAHLCKDILASGDAFIIGTEMVGMTTVRDSASNYPFVNALVTLLADVKSILPSGVDVSYAADWSEYHSHRPSDGSGDVYFNMDPLWAVCDFIGIDNYLPLTDWRTADEYDYRLDTLMDGVEGGEYYDYFYASDADRDANTRSTIVDGLYSISGLAIDDTISPSTNGTSYNPSIRQNNVSFSCRVRLPSTPAEGVLYKQGGPSLGCCVVLRDSGSTLRLRSGDGGALGASTSDTVVLDVDTSTLPMDGELHTIAWDFRVNPGRVRLWIDGVLIGTENTTGSGALDGNVWCGTNDYGYLDDFGDDGMTGEPVGAWPDTTGAEDLLVYQGELIDDAGPVYEHWIYRQKDMRNWWLHDHFDRPGGTRDTSSTSFTPGSKPIWFTEFGCAAIDKGANQPNVFLDPKSSESFTPHFSTGARDDLIQRRYAEAWIKYWAANSPSGMISTADMFAWTWDARPFPNYPYGNWGDRDNWRQGHWLNGRLNVMYLKDVCRDLGSMVGLTDDDFDFTGLEKFPVLVRGHLSTTMKSPREVIEELAMLNHASILESEGLIKVLRKRLADRVDLSADDLISTSNNPGGFEIVTAQETEVPREVTITFSNESNAFQSASANGKRQTGNSQLVQDIRSSTVIEPEEARNICEELLNERVIGRQTFKGSFPRDILRYDPGDLFGITLRGRDADFKIAELTIGSDVQVEATRCDKTIYTPRSVIAPLPTTGSGISTPGSALVEFIDIPLLTAASLRPWAPRVVAFQNPWPGGVVIYQDDGSGGYSEINRLTTPATMGETVDVFTAGPVAKWDNESTLAVSFYAPTTSILSLSETSVLNGSNTIAVQTSKGWELVQFRTATLQGDGSYHLTGLLRGQNGTEYAMDTSLAAGARVVFINAAWGSLNMTQGQIGIEKDYRYGPAGIAVGDDRYQDETYTPSGRSLMPFSPVHLKRKTSGTDHVLQWIRRSRINADTWDGTVPLNEETEAYEVDIYDGSSVVRTIEVAGTNSVTYTAAQQTADFGSTQSRLKFTVYQISAAVGRGEGATYDDT

Physico‐chemical properties

protein length:	1460 AA
molecular weight:	159522,89480 Da
isoelectric point:	4,57192
aromaticity:	0,09658
hydropathy:	-0,32822

Domains

Domains [InterPro]

DC_1879
ATT
1–255

DC_1879 G3DSA:3.20.20.80 IPR013320 IPR025195 DC_1657 IPR056490

cd19607
STR
243–920

cd19607 IPR032876

IPR025195
STR
421–578

IPR025195 G3DSA:3.20.20.80 DC_1311

ARB06121.1

1 1460

Architecture

ATT

STR

ATT

STR

RBD

ATT 1-255 | STR 256-951 | ATT 952-1111 | STR 1112-1134 | RBD 1135-1459 |

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Domains [InterPro]

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
DC_1879	ATT	DC_1879	1	255	Novel HMM	DC_1879	N-terminal	Low	Positional only	54 proteins / 54 hits
cd19607	STR	DC_0890	243	920	InterPro cluster	cd19607	Central	Low	Positional only	5 proteins / 5 hits
G3DSA:3.20.20.80	STR	G3DSA:3.20.20.80	279	555	Merged direct domain	G3DSA:3.20.20.80	Central	Low	Positional only	38 proteins / 38 hits
IPR025195	STR	DC_0520	421	578	InterPro cluster	GTA, TIM-barrel-like domain	Central	Low	Positional only	5 proteins / 6 hits
IPR013320	STR	IPR013320	601	728	Merged direct domain	Concanavalin A-like lectin/glucanase domain superfamily	Central	Low	Positional only	237 proteins / 237 hits
G3DSA:3.20.20.80	STR	G3DSA:3.20.20.80	692	897	Merged direct domain	G3DSA:3.20.20.80	Central	Low	Positional only	38 proteins / 38 hits
IPR025195	STR	DC_0520	764	888	InterPro cluster	GTA, TIM-barrel-like domain	Central	Low	Positional only	5 proteins / 6 hits
DC_1657	STR	DC_1657	890	1134	Novel HMM	DC_1657	Central	Low	Positional only	43 proteins / 43 hits
IPR032876	ATT	DC_0307	952	1111	InterPro cluster	Tip attachment protein J	Central	Medium	Text match	1111 proteins / 1112 hits
DC_1311	RBD	DC_1311	1106	1459	Novel HMM	DC_1311	C-terminal	Low	Positional only	46 proteins / 46 hits
IPR056490	RBD	DC_0637	1205	1305	InterPro cluster	Rcc01698-like, C-terminal domain	C-terminal	Low	Positional only	42 proteins / 42 hits

Taxonomy

	Name	Taxonomy ID	Lineage
Phage	Dinoroseobacter phage vB_DshS-R5C [NCBI]	1965368	Uroviricota > Caudoviricetes > Nanhaivirus >
Host	Dinoroseobacter shibae [NCBI]	215813	cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Alphaproteobacteria > Rhodobacterales

Coding sequence (CDS)

Genbank protein accession

ARB06121.1 [NCBI]

Genbank nucleotide accession

KY606587 [NCBI]

CDS location

range 39091 -> 43473
strand +

CDS

GTGATCCAGGCAGCGGTGACTGTCGCGCTCGGCGCAGCCTACCGCGCGTTGACGCCCGACACGATCATCCAGAACGAAGAAGCGCGGCTCGAAGAAGCCAAGATCACGTCCGCCTCCGAAGGCGCGACGATTGCGCAGTTGTGGGGTCGTCAGCGCGTTCCTGGTCAGATCATCTGGGCAACCAAATTCCGCGAGGTCGTCGAGGTCGAGACGGAGACGCAGAGTGGCGGTAAAGGCGGTGGCCCGGACATCGTCACCGAGACGACGACCTACCGGTACTTCCAATCGTTCGCGGTCGGCCTGTGTGAAGCGAACGGCGCGCGGATCCGCGTCGGGCGTATCTGGGCAGATGGCGTTGAACTCGACCAGTCGGCCTACACCATCAGGTTCTACGACGGCAGCGAGACGCAGTCGCCCGACTCGGCAATCGTCGCGACGGAAGGCGACGCGCCTGCGTTCCGCGGGCTGGCCTACCTGGTGTTCGACGACTTCGAGGTCTCGGATCATGGCAACCGCATCCCGCAGATCACCGTCGAGGTGACGCGCTCCTTGGACGACGATCCCGACCGCATCGAAGAGAAGCTCGAGGCCGTGACGATGATCCCGGGCGCCAACGAGTTCATCTATGGGACGCGCACCTACTACACGGGCGGCGGTGAGAACAGCTCCACCGAGAACGTGTCTCAGGTGCCCGACACCCCTGACTTGAAGGTCTCGCTCGATCAACTCGAGGACGACGTGACCAACATCGCCTCGGTGGAGCTCGTCGTGTCGTGGTTCGGCACTGACCTGCGCTGTGGCAACTGCGAAGTCAAGCCCAAGGTTGACTTCAAGGAAAAGACGGTCAAGCCAGTCGACTGGCGCGTCGCGACCGAGACGCGCTCGTCTGCTGACCTCGTGAGCGAGTACGAATCTGGCAAGGTGGCTTTCGGTGGCACGCCTGCAGACGTCACTGTGCGCGAGGCTCTGACCGAGATCAAAGGCCGCGGGCATCGCGCTGTCTTCTATCCGTTCATCATGATGGACATCGAGAACGGCAACTCGCTCCCCAACCCGTATTCCGACAACGCTGCGACGACGGGTCAACCAGTCTACCCGTGGCGCGGCCGGATCACCTGCTCCCCAGCCGCGGGTTACGTGGGATCCCCGGACAAGACGGCAGCAGCCGGGACGCAGGTCGCGTCCTTCGTCGGCACGGCAGCAGCCGGCGACTTCGGCACCTGGAATGGGACCAACGTCCCCTACACGGGTCCCAGCGAGTGGTCGTTCCGCCGGATGGTCTTGCACTACGCGCACCTGTGCAAGGACATCCTCGCCTCGGGAGACGCGTTCATCATCGGCACCGAGATGGTCGGAATGACGACCGTCCGCGATTCCGCGTCGAACTACCCCTTCGTCAATGCGCTGGTCACCCTGCTTGCAGACGTCAAGTCGATCCTGCCCTCGGGCGTGGACGTGTCTTACGCGGCTGACTGGTCGGAATACCACTCACATCGCCCGAGCGATGGCTCAGGGGACGTCTATTTCAACATGGACCCGCTTTGGGCGGTGTGCGACTTTATCGGGATCGACAACTACCTGCCGCTGACTGACTGGCGCACGGCTGACGAGTACGACTACCGGCTCGACACGCTCATGGACGGCGTTGAAGGAGGCGAGTACTACGACTACTTCTACGCGTCGGATGCTGATCGGGACGCCAACACGCGCTCGACCATCGTCGATGGTCTCTACTCGATCTCGGGACTCGCAATCGACGACACGATTTCTCCTTCGACAAACGGGACTTCGTATAATCCGAGCATCCGGCAGAATAACGTTTCGTTTAGCTGCCGCGTGCGACTGCCATCGACACCGGCCGAAGGCGTCCTGTATAAGCAAGGCGGTCCGTCGCTTGGTTGCTGTGTTGTCCTGCGAGACTCTGGTAGCACGTTGCGTCTGCGGTCCGGCGACGGCGGAGCGTTGGGCGCTTCTACAAGTGACACGGTCGTTCTCGACGTTGACACGTCAACTCTGCCCATGGACGGTGAGCTTCACACCATCGCCTGGGATTTCCGCGTAAACCCCGGGCGCGTGCGACTGTGGATTGACGGCGTGTTAATCGGTACCGAGAACACAACAGGTAGTGGCGCGCTCGACGGTAACGTCTGGTGCGGAACAAACGACTACGGCTACCTTGACGACTTCGGTGACGACGGGATGACCGGTGAACCCGTTGGAGCTTGGCCTGATACAACTGGAGCGGAAGATCTTCTCGTCTACCAAGGCGAACTGATCGACGATGCAGGGCCCGTCTACGAGCACTGGATCTACCGCCAGAAGGACATGCGCAACTGGTGGCTGCATGATCACTTCGACCGCCCGGGCGGGACGCGCGACACGTCGAGCACGTCCTTCACTCCTGGGTCGAAGCCGATCTGGTTCACCGAGTTCGGCTGCGCGGCAATCGACAAGGGCGCTAACCAGCCGAACGTGTTCCTGGACCCGAAGTCGTCGGAGTCCTTCACGCCGCACTTCTCGACGGGTGCTCGCGACGACCTGATCCAGCGACGCTACGCCGAGGCGTGGATCAAGTACTGGGCCGCGAACTCGCCCTCGGGCATGATCAGCACCGCGGATATGTTCGCCTGGACGTGGGACGCGCGACCGTTCCCGAACTACCCCTATGGCAACTGGGGCGACCGCGACAACTGGCGGCAGGGTCACTGGCTGAACGGGCGTTTAAACGTCATGTACTTGAAGGACGTCTGCCGCGACCTCGGGTCGATGGTTGGCTTGACCGACGATGACTTCGACTTCACCGGCCTCGAGAAGTTCCCCGTCCTCGTCCGCGGGCACCTGTCCACAACGATGAAGTCACCGCGCGAGGTGATCGAAGAGCTTGCCATGCTGAACCATGCGAGCATCCTCGAGTCGGAGGGCCTTATCAAGGTGCTTCGCAAGCGCCTCGCTGACCGCGTCGATCTGTCCGCTGACGACCTCATCTCGACGAGCAACAACCCGGGCGGGTTCGAGATCGTCACGGCGCAGGAGACAGAGGTCCCGCGCGAGGTCACGATCACCTTCTCGAACGAGTCGAACGCGTTCCAATCGGCATCTGCCAACGGCAAGCGGCAGACAGGCAACTCCCAGCTCGTCCAGGACATCCGTTCCTCGACCGTGATCGAACCCGAGGAGGCACGCAACATCTGCGAGGAGCTGCTCAACGAGCGCGTGATCGGTCGTCAGACGTTCAAGGGTTCCTTCCCGCGAGACATCCTTCGCTACGACCCGGGCGACCTGTTCGGGATCACGTTGCGCGGGCGAGACGCCGACTTCAAGATCGCGGAGCTGACCATCGGCTCGGACGTGCAGGTTGAGGCGACGCGCTGCGACAAGACGATCTACACGCCGCGCTCTGTCATTGCGCCCCTGCCCACGACGGGATCAGGCATCTCGACCCCTGGCTCTGCCCTCGTCGAGTTCATCGACATTCCGCTGCTCACCGCAGCCAGCCTGCGCCCTTGGGCGCCGCGTGTCGTCGCATTCCAGAACCCGTGGCCTGGCGGCGTTGTCATCTACCAGGACGACGGGTCGGGCGGCTACTCCGAGATCAACCGCCTCACAACGCCCGCAACGATGGGCGAGACGGTCGACGTGTTCACCGCGGGCCCTGTCGCTAAGTGGGACAACGAGTCGACCCTCGCTGTGTCGTTCTACGCGCCCACGACGAGCATCCTGTCGCTGTCTGAGACGTCTGTGCTCAACGGCTCGAACACCATCGCCGTGCAGACGTCGAAGGGCTGGGAGCTTGTGCAGTTCCGCACCGCGACGCTGCAAGGAGACGGGTCGTATCACCTGACGGGCCTGCTGCGCGGTCAGAATGGCACCGAGTACGCCATGGACACGTCGCTCGCTGCTGGTGCGCGGGTCGTGTTCATCAACGCGGCGTGGGGATCGCTCAACATGACGCAGGGCCAGATCGGCATCGAGAAGGACTACCGCTACGGGCCTGCAGGTATCGCGGTCGGAGATGATCGCTACCAAGATGAGACCTATACCCCGAGCGGACGCTCGCTCATGCCGTTCTCGCCTGTTCACCTCAAGCGCAAGACGTCGGGAACCGACCACGTCCTGCAGTGGATCCGGCGGTCGCGCATCAACGCAGACACCTGGGATGGTACTGTTCCGCTGAACGAGGAGACAGAAGCCTACGAGGTGGACATCTACGACGGCTCGTCCGTCGTGCGAACCATCGAAGTTGCGGGAACCAACTCGGTCACGTATACTGCCGCGCAACAGACGGCTGACTTCGGGAGCACGCAATCGCGCCTCAAGTTCACCGTCTACCAGATCTCGGCCGCTGTGGGCCGTGGCGAAGGAGCCACCTATGACGACACCTAA

Genome Context

Tertiary structure

PDB ID

de20ae8df99ae04c8088c150fe999d53c501f0f235598e1709e5cfc6b030606a

ColabFold

Source ColabFold

Method ColabFold

Resolution 0,8855

Oligomeric State monomer

Download PDB

Model Confidence

Very high
pLDDT > 90

High
90 > pLDDT > 70

Low
70 > pLDDT > 50

Very low
pLDDT < 50

Literature

Title	Authors	Date	PMID	Source
A novel roseosiphophage isolated from the oligotrophic South China Sea	Yang,Y., Cai,L. and Zhang,R.	—	—	GenBank

Protein

Domains

Domains [InterPro]

Domains [InterPro]

Taxonomy

Coding sequence (CDS)

Coding sequence (CDS)

Genome Context

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Model Confidence

Literature