Protein

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Genbank accession
YP_009837897.1 [GenBank]
Protein name
virion structural protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,85
TF
Evidence RBPdetect2
Probability 0,66
Protein sequence
MCDKDTCNDASCCGECEPWNCLEQQVNDILATKEGQLQGYVDESKNSAAESKASAEASAQSAAESKEFRDEAETAASTAVAAEGVVLGVASTLQDTADKLGTAIAGIAVVTWYYTAVSENQTVIPVPDDKNQIAIQAIYIEGARKEPGPSRDFTYDPVTKQITLVEGIPLGQEIAIILGVYPENSDDITHILASSTGAGLIGTTSGFTAQEELNANSGSFQDGAKLLNKNNRIIDRSTNPAQLYIWDGLFPKAVPVGSTPETSGGVGVGAWISVGDAALRSELAMNDGAYLSGYGSMTVGSFLDEMTNATLITAVVTDLNANNRDAIYAHDGYVYVPRGVTVRCNFLPADDVRKFVGHGRVTTTDPWGYTHTFDVELANTGSKITARQIVAQGIKQLQGPGWQQTTIGTIGDSITDGSAGDNFTFPNPIDADGNLSSTNYDHGSNPAGGMNSWFHHFVNTVNLLAGYSEYHNRNICTGYNAARSGMGINSGWAYRNFDFGFFQNAAYGNKAPEVLLVSMGTNDVGQVFTKSDCEAYIDKLDALIAKANGYGCKVVLVSMTHFSAMAPVFYDAVMTCVQNNHPNVEFLNLADDLKLLANSSIGFYNELFREFDAIHPKTLAHQFLGGALARRMLPDRVFSIQNGDNVRSAQSGSVQAFMPLLDDITPFGIDVSANWLLPETIWPIYQTSSGTDGSDITIRHFVWVERVTQLYIVEPHVNYYESGAIPGASAKIMYPCLAGEARSRELELASNLKASFDGFLVTECDLLWPGLNVIDVKYSSVINAYAPILQFREPNWRGEFGPMRIKIPSGSANLYSNNTQTHFLQYMSFNASSPLDPLPDAGRGVRVSDWLITFAIKRASIGVAVAAWFHQFLGTSIAVFYKSATSIEVCRMTSGILKEVIAGVTGNFSSDWHVQFAQASTGSIVNVIDSTGVETITAITGVSGGSIGIINLNGEAAELVVAGVSVELPRNGHIVI
Physico‐chemical
properties
protein length:976 AA
molecular weight: 104834,18310 Da
isoelectric point:4,74750
aromaticity:0,09221
hydropathy:-0,04857

Domains

Domains [InterPro]
DC_0519
STR
91–635
DC_0519 DC_2010
IPR040775
RBD
213–276
IPR040775 IPR049297 IPR036514
G3DSA:2.10.10.80
ATT
214–285
G3DSA:2.10.10.80 SSF52266
cd00229
ENZ
490–630
cd00229
YP_009837897.1
1 976
Architecture
STR
ATT
STR
RBD
STR 91-213 | ATT 214-285 | STR 286-635 | RBD 636-967 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009837897.1
1 976
Domain Start End Length (AA) Confidence
N-terminal 1 285 285 0,9922
Central domain 286 484 200 0,9384
C-terminal 485 976 491 0,6332
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-285
Central
286-484
C-terminal
485-976

Taxonomy

  Name Taxonomy ID Lineage
Phage Pectobacterium phage Nepra
[NCBI] 		2163635 Uroviricota > Caudoviricetes > Schitoviridae > Cbunavirus nepra >
Host Pectobacterium atrosepticum
[NCBI] 		29471 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009837897.1 [NCBI]
Genbank nucleotide accession
NC_048704 [NCBI]
CDS location
range 37710 -> 40640
strand +
CDS
ATGTGTGATAAAGACACTTGCAATGACGCCTCTTGCTGCGGTGAATGTGAACCGTGGAACTGCTTAGAACAGCAGGTCAACGACATTCTTGCTACCAAAGAGGGGCAACTCCAGGGTTACGTGGATGAATCCAAAAACTCAGCCGCTGAGTCGAAAGCCTCGGCAGAGGCGTCGGCTCAATCGGCTGCGGAATCGAAGGAGTTCCGCGACGAAGCAGAAACAGCAGCAAGCACGGCAGTAGCCGCAGAGGGTGTTGTGCTCGGTGTAGCCAGTACACTACAGGACACCGCAGATAAGCTCGGTACTGCCATTGCTGGTATTGCTGTGGTTACTTGGTACTACACGGCTGTATCTGAAAATCAGACTGTAATTCCTGTGCCTGATGATAAAAACCAGATTGCTATTCAAGCAATCTATATTGAAGGTGCCCGTAAGGAACCGGGGCCAAGTCGTGATTTTACTTACGATCCAGTTACAAAACAAATTACCCTAGTTGAAGGTATCCCGCTAGGGCAGGAAATAGCCATTATTCTCGGTGTTTACCCTGAGAACTCGGACGATATTACTCATATCCTGGCTTCCTCTACGGGTGCAGGTTTGATTGGTACTACTTCTGGTTTTACTGCGCAAGAAGAGTTAAATGCTAACTCTGGGTCTTTCCAAGATGGTGCTAAGTTACTCAACAAAAACAATCGTATTATCGACCGATCAACTAATCCTGCTCAATTGTATATTTGGGATGGCCTATTTCCTAAAGCAGTTCCTGTTGGTTCAACACCTGAAACATCTGGTGGCGTTGGAGTTGGTGCGTGGATAAGTGTTGGTGATGCAGCACTGCGGAGCGAACTGGCTATGAATGACGGCGCGTATCTGTCTGGCTATGGCTCAATGACGGTCGGTTCATTTCTAGATGAGATGACAAACGCAACGCTCATCACTGCTGTTGTTACTGATCTGAATGCAAACAATCGTGATGCAATTTACGCTCACGATGGTTATGTATACGTCCCGCGTGGCGTTACTGTCCGCTGCAATTTTTTGCCTGCTGACGATGTGCGTAAATTTGTCGGTCACGGAAGAGTAACAACAACCGATCCGTGGGGGTATACGCACACGTTTGATGTAGAACTGGCTAACACTGGCTCAAAAATCACGGCTCGGCAGATTGTGGCTCAAGGCATCAAACAGCTGCAAGGGCCTGGGTGGCAACAGACGACAATCGGAACTATTGGGGATTCGATCACAGATGGCTCAGCGGGTGATAATTTCACGTTCCCGAACCCAATTGATGCTGACGGTAATTTGTCATCAACAAACTATGATCATGGCTCAAATCCGGCTGGCGGGATGAATTCTTGGTTTCATCATTTCGTAAACACAGTAAACCTGCTAGCTGGTTATTCTGAATATCACAATCGCAATATTTGTACCGGATATAATGCCGCGCGCTCAGGCATGGGAATTAATTCCGGCTGGGCGTACCGAAATTTTGATTTCGGTTTTTTTCAAAATGCGGCATATGGAAATAAAGCTCCTGAGGTATTGCTCGTGTCGATGGGAACCAATGACGTTGGCCAGGTGTTTACTAAGTCTGATTGTGAAGCATATATCGACAAATTAGACGCATTGATCGCGAAGGCTAACGGCTATGGCTGTAAAGTTGTTCTGGTGTCTATGACGCATTTTTCAGCAATGGCTCCAGTATTTTACGACGCTGTGATGACATGTGTTCAAAACAATCACCCGAACGTTGAATTTCTGAATTTGGCAGATGATTTGAAACTGCTGGCTAACTCATCAATTGGTTTTTACAACGAGTTATTCCGGGAATTTGATGCTATTCATCCGAAAACGCTGGCCCATCAATTCCTGGGGGGAGCGTTAGCTCGCCGCATGCTCCCTGATCGGGTTTTTAGTATTCAGAACGGCGATAACGTGCGCTCTGCCCAGTCAGGTTCTGTACAAGCGTTTATGCCATTGCTCGATGACATCACGCCTTTCGGCATTGATGTCTCTGCAAACTGGCTACTACCTGAAACAATATGGCCTATTTATCAAACCAGTTCAGGCACGGATGGTTCTGATATAACAATTCGACATTTTGTATGGGTAGAGCGAGTAACGCAGTTGTATATCGTTGAGCCTCACGTGAATTACTACGAATCGGGGGCCATACCGGGCGCATCAGCAAAAATTATGTATCCGTGCCTCGCAGGCGAGGCCAGAAGCAGAGAGTTAGAGTTAGCGTCAAATTTGAAAGCGTCATTTGATGGATTTCTCGTAACAGAGTGCGATCTGTTGTGGCCTGGACTCAACGTAATTGATGTTAAATATTCCAGCGTAATAAACGCATACGCACCAATTCTGCAATTTAGAGAACCAAACTGGCGTGGAGAGTTTGGCCCGATGCGTATAAAAATACCGTCAGGTTCCGCAAATTTGTATTCAAACAATACACAAACTCACTTTTTGCAGTACATGTCGTTTAACGCATCGAGTCCATTAGACCCGCTGCCAGATGCAGGTCGCGGTGTGAGAGTGTCTGACTGGCTGATAACATTTGCAATTAAACGTGCGTCTATTGGGGTTGCTGTAGCTGCATGGTTTCATCAATTCCTGGGCACATCTATTGCTGTGTTCTATAAATCTGCAACATCTATTGAAGTGTGCCGAATGACGAGCGGAATACTGAAAGAGGTCATTGCTGGCGTGACGGGTAATTTCTCATCTGACTGGCACGTTCAGTTCGCGCAGGCATCAACCGGAAGTATAGTTAACGTAATTGATTCTACTGGAGTAGAAACAATCACGGCGATAACAGGAGTCTCAGGTGGCAGTATAGGTATCATTAATCTGAACGGAGAGGCTGCGGAGTTGGTCGTGGCTGGAGTGTCTGTGGAATTACCGCGAAACGGTCATATTGTTATCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
1c30a0483f3615fb9559f7f9a0bd098022ec1325db5404507cbe9866ec436513
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5534
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Phage therapy in agriculture - a green tech approach to combat plant pathogenic bacteria Carstens,A.B., Djurhuus,A.M. and Hansen,L.H. 2021 — GenBank