Protein

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Genbank accession
YP_009875766.1 [GenBank]
Protein name
receptor binding tail protein
RBP type
TSP
Evidence DepoScope
Probability 0,83
Protein sequence
MTIKNFTFFSPNGTEFPVGSNNDAKLYMMLTGMDYGTIRRKDWKSPLNTALNVQYTNTSIIAGGRYFELLNETVALKGNAVNYIHANIDLTQTANPVSLSAETANNSNRVDINNDSGVLKVCFDIVTTSGTGVISIKPTVQTSIFDSVNSNNISANDISLKGSLNVPTQKWTVQTTNGLILQFTKKNNDLVIVQFSGEVTLTASGKIMGGTWVDFPYRPSSIQSLVGHLAGSGNSFHVDINPDGSITWWGPYVGYDAVTPRGNASYFIK
Physico‐chemical
properties
protein length:269 AA
molecular weight: 29197,45040 Da
isoelectric point:6,82371
aromaticity:0,09665
hydropathy:-0,14907

Domains

Domains [InterPro]
G3DSA:2.60.520.10:FF:000001
Unmapped
1–140
G3DSA:2.60.520.10:FF:000001 G3DSA:2.60.40.1830
G3DSA:2.60.520.10
STR
1–140
G3DSA:2.60.520.10 IPR008982
G3DSA:2.60.520.10
STR
1–135
G3DSA:2.60.520.10 cd07964
IPR048780
RBD
2–138
IPR048780 IPR015027
SSF141658
STR
2–138
SSF141658 IPR008982
YP_009875766.1
1 269
Architecture
STR
RBD
STR 1-140 | RBD 166-269
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009875766.1
1 269
Domain Start End Length (AA) Confidence
N-terminal 1 159 159 0,9229
Central domain 160 258 100 0,0049
C-terminal 259 269 10 0,9976
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-159
Central
160-258
C-terminal
259-269

Taxonomy

  Name Taxonomy ID Lineage
Phage Lactococcus phage i0139
[NCBI] 		1874593 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Lactococcus lactis
[NCBI] 		1358 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Lactobacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009875766.1 [NCBI]
Genbank nucleotide accession
NC_049375 [NCBI]
CDS location
range 15486 -> 16295
strand +
CDS
ATGACAATTAAAAACTTTACATTCTTTAGTCCAAACGGTACAGAGTTTCCAGTCGGTTCTAATAATGACGCAAAGTTATATATGATGTTGACTGGAATGGACTATGGAACAATTAGGCGCAAAGACTGGAAAAGTCCGTTAAATACAGCTCTTAATGTACAATACACTAACACATCAATCATTGCAGGTGGGAGGTATTTTGAACTATTAAATGAAACTGTTGCCTTAAAAGGTAATGCAGTCAATTATATCCATGCAAACATTGACTTAACACAAACAGCAAACCCTGTAAGTTTATCAGCAGAAACAGCAAATAATAGTAATCGTGTTGATATAAACAACGATTCTGGCGTTTTGAAAGTTTGTTTTGATATTGTTACGACTTCAGGAACTGGCGTAATAAGCATTAAACCGACTGTTCAGACTAGTATTTTTGATAGTGTCAATAGCAACAATATTTCTGCAAACGATATATCACTTAAAGGCTCACTCAATGTTCCAACTCAAAAGTGGACGGTTCAGACTACAAATGGTTTGATATTGCAATTTACTAAAAAGAACAATGATTTAGTAATTGTCCAATTCTCCGGAGAGGTAACACTTACAGCAAGTGGTAAAATTATGGGGGGAACATGGGTAGATTTTCCGTACCGCCCCTCTTCTATTCAAAGTCTTGTTGGTCATCTTGCTGGGTCAGGTAATAGTTTCCATGTTGACATAAACCCAGATGGTAGTATTACTTGGTGGGGTCCATACGTTGGTTATGACGCTGTGACGCCACGTGGTAACGCAAGTTACTTTATAAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
be6c71909ddfb27dc9d25acf250adda2dfaf18fd3e1ce74b19a673b624032705
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7468
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Bacteriophages play LEGO with their Carbohydrate Binding Modules Hayes,S. 2019-07-02 — GenBank