Protein

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Genbank accession
YP_009610478.1 [GenBank]
Protein name
tail protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MILEGVYPSFLKGVSQQTPQERSDGQLGAQLNLLSDAVTGLRRRGGVKFQAKLTGIPNSSYIRLIDINGINYIMIVDTVTGTLKIYNFNGSLIKEHQTDYLKASNGKASIRSTVSRNNCFLLNTEQVITKTLIGGTNPTPNPSTMGYISIRSGQFSKMYSVDIKSGTYSVSLQVSTHGTDAALASPEYVATKFMENIKADTTLNSRYDVVREGSTVALKAKSATDTNLLVIESGTGSTYIQTSNSSRVQGKQDIIANLPNILDKYIIAVGTVGNSAYYQYNAESSTWKECGVYEAPYKFTNEPIYWYFDDTDTIQVKSLDIQPRTAGDDDNNPLPKFVDFGITGISAYQSRLVLLSGSYVNMSATADFNVYMRTTVDELQDDDPIEVSSTALSAAQFEYAVPYNKDLVLLAQNQQAVIPANSTVLTPKTAVIYPSSKANISMASEPQVVSRSLYYTYQRGTDYYQVGEMIPNAYSDAQYYAQNLADHIPLYATGVCTSITGSTTDNMAVFSSDQKELLIHQYLWAGEDRPLMSFHKWELPYDVLHVQFLQEYLVLFMDVGDDLVVGTINVQLNQLDNKPIPFLDIYQYVDIVDGEGTLPEFLPDGELVAAVYSSETMRHAMVQYEIEGTKIKCQFNGRIYLGVPYESSLTLTPPFVKDSKGRVVAGSNSIVVDLIMTFKGTGEFEYHVSDAYGDVFDGETSAQAWSEAQLGYTRVNTVSDVKFPCGTLLSSTEFSLRTTGTTELNIISTGYNIRIPNRGRRRL
Physico‐chemical
properties
protein length:763 AA
molecular weight: 84329,76920 Da
isoelectric point:4,90500
aromaticity:0,10092
hydropathy:-0,20786

Domains

Domains [InterPro]
DC_0058
STR
1–763
DC_0058
IPR058003
TTP
7–761
IPR058003
YP_009610478.1
1 763
Architecture
STR
STR 1-763
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009610478.1
1 763
Domain Start End Length (AA) Confidence
N-terminal 1 138 138 0,9898
Central domain 139 338 201 0,1007
C-terminal 339 763 424 0,1988
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-138
Central
139-338
C-terminal
339-763

Taxonomy

  Name Taxonomy ID Lineage
Phage Acinetobacter phage vB_ApiP_P1
[NCBI] 		2016052 Uroviricota > Caudoviricetes > Autographivirales > Beijerinckvirinae > Friunavirus
Host Acinetobacter pittii
[NCBI] 		48296 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Moraxellales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009610478.1 [NCBI]
Genbank nucleotide accession
NC_042006 [NCBI]
CDS location
range 26292 -> 28583
strand +
CDS
ATGATTCTTGAGGGAGTGTACCCGTCATTCTTGAAAGGTGTATCACAGCAAACACCTCAAGAGCGTAGTGACGGACAATTAGGCGCACAGCTTAATTTATTATCTGATGCTGTAACAGGTCTACGTAGACGTGGTGGTGTTAAATTCCAAGCTAAGTTAACAGGTATTCCTAACAGTAGTTATATACGTTTGATTGATATCAACGGTATTAACTATATTATGATCGTAGATACTGTTACAGGTACTTTGAAGATTTATAATTTTAACGGTTCCTTAATTAAAGAACATCAAACAGATTACCTTAAGGCTTCCAACGGTAAGGCTAGTATCCGTAGTACAGTGTCACGTAATAATTGCTTTTTATTAAACACCGAACAAGTTATTACTAAGACACTTATAGGTGGTACTAACCCAACACCTAATCCAAGTACTATGGGCTATATCAGTATTCGTTCTGGTCAGTTCTCTAAGATGTACTCAGTAGACATTAAGTCGGGGACATACTCTGTAAGTTTACAAGTATCTACGCACGGTACAGATGCAGCATTAGCGTCTCCTGAATATGTTGCTACGAAGTTTATGGAAAACATAAAAGCAGACACAACATTAAATAGTCGTTATGATGTTGTACGTGAGGGCAGTACGGTTGCATTAAAAGCTAAGTCTGCTACAGATACTAACTTATTAGTAATAGAATCTGGTACAGGTAGTACTTATATTCAAACTAGTAATTCTAGTCGTGTACAAGGTAAGCAAGACATTATTGCTAATCTACCTAATATATTAGATAAATATATTATTGCAGTAGGTACAGTCGGTAATTCGGCTTACTATCAATATAATGCAGAGTCTAGCACTTGGAAAGAGTGCGGTGTATATGAAGCACCTTATAAGTTCACTAACGAACCTATTTACTGGTACTTTGATGATACCGACACTATCCAAGTTAAAAGCTTAGATATTCAACCACGTACAGCAGGTGATGATGATAATAACCCATTACCTAAGTTTGTGGATTTCGGTATTACAGGTATTAGCGCTTACCAATCACGCTTAGTACTGCTTAGTGGTTCATACGTTAATATGAGTGCTACAGCAGACTTTAATGTCTATATGCGTACTACTGTAGATGAATTACAGGATGATGATCCAATTGAGGTGTCTAGTACTGCTTTAAGTGCTGCACAGTTTGAATATGCTGTTCCGTATAATAAAGATTTAGTTTTATTAGCTCAGAACCAACAAGCTGTTATCCCAGCCAATAGTACTGTACTTACACCTAAGACGGCTGTTATCTACCCAAGTTCAAAAGCTAACATTAGTATGGCTAGTGAACCACAGGTTGTATCCCGTAGTTTGTATTATACATATCAACGTGGTACGGATTATTATCAAGTTGGTGAGATGATTCCTAATGCTTATTCAGATGCTCAGTACTATGCTCAGAACTTAGCAGACCATATTCCGCTATATGCTACAGGTGTTTGTACTTCAATCACAGGTAGTACTACAGATAATATGGCAGTGTTCAGTTCTGATCAGAAAGAGTTACTTATACATCAATATTTATGGGCAGGTGAAGACCGTCCGTTAATGAGCTTCCATAAATGGGAATTACCTTATGATGTGCTTCACGTACAATTTCTACAAGAGTATTTAGTATTGTTTATGGATGTGGGTGATGATTTAGTGGTTGGTACTATTAATGTACAGTTAAACCAACTAGACAATAAACCTATCCCATTCTTGGACATTTACCAATATGTAGATATTGTAGACGGGGAAGGTACATTACCTGAGTTCCTACCAGACGGTGAGTTAGTAGCTGCGGTATACAGTTCTGAGACTATGCGTCATGCTATGGTTCAATATGAAATCGAAGGTACTAAGATTAAGTGTCAATTCAATGGACGTATTTATCTAGGTGTACCTTATGAAAGTTCACTCACATTAACACCTCCATTTGTTAAAGATAGTAAAGGTCGAGTAGTTGCTGGTAGTAACAGTATAGTTGTCGATCTTATAATGACATTCAAGGGTACAGGTGAGTTTGAGTACCATGTTTCTGATGCTTATGGTGATGTGTTTGATGGTGAAACGTCTGCACAAGCTTGGTCAGAAGCACAACTAGGGTATACGCGAGTAAACACAGTAAGTGATGTTAAGTTCCCATGTGGTACGCTATTAAGTTCAACAGAATTTAGTCTTAGGACCACAGGTACGACGGAACTAAATATTATTAGCACTGGTTATAATATTCGTATACCCAATAGAGGACGGAGACGTTTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
708f4a24a2d96bedafd72440a1f3bd0e1431830f78a8766bc6fefa05809a48fd
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8589
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Sensitivity acquisition of phages to Acinetobacter calcoaceticus-baumannii complex species through exchange of pectate lyase domains Oliveira,H., Rita,A., Konstantinidis,N., Dotsch,A., Ferreira,A., Akturk,E., Nemec,A., Sillankorva,S., Shneider,M. and Azeredo,J. 2021-06 — GenBank