Protein

View in Explore
Genbank accession
QSM01324.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
Protein sequence
MLGIFTSLLSSRSFSIVDQNTNQLVAADLRISRVNTRFSSVGQRHMLEDGTTKMDSRTVHPMEIIVEVFCPSIDVVDQINQLLLDRDTLYKVITRGMVFERMMCTSEALNQTPDMISATPARLTFSQVLVQNPKPIMFRNAGDSSIIDRGLALAEDVVGSAGDLFDYAVNGVQNAADLF
Physico‐chemical
properties
protein length:179 AA
molecular weight: 19792,44950 Da
isoelectric point:4,80519
aromaticity:0,06145
hydropathy:0,07430

Domains

Domains [InterPro]
DC_0601
STR
1–178
DC_0601
IPR054442
ATT
4–132
IPR054442
QSM01324.1
1 179
Architecture
ATT
STR
ATT 1-132 | STR 133-178 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage vB_PaeM_V523
[NCBI] 		2813168 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudomonas aeruginosa
[NCBI] 		287 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QSM01324.1 [NCBI]
Genbank nucleotide accession
MW595220.1 [NCBI]
CDS location
range 22569 -> 23108
strand +
CDS
ATGTTAGGGATTTTCACCAGCCTCCTAAGCTCGCGATCTTTTTCGATTGTGGACCAAAACACAAACCAGCTAGTTGCTGCGGATTTGAGAATAAGCCGGGTCAACACCCGGTTTTCTTCTGTAGGGCAACGCCACATGCTGGAAGACGGCACGACCAAGATGGATTCCAGAACGGTCCATCCTATGGAAATCATCGTCGAAGTATTTTGCCCTTCCATTGACGTCGTCGATCAGATCAACCAATTGCTCCTGGATCGCGACACTCTGTACAAAGTCATCACTCGCGGCATGGTATTCGAACGGATGATGTGTACCAGCGAAGCGCTCAATCAGACTCCGGATATGATATCGGCGACTCCTGCGCGGCTGACATTCTCCCAAGTGCTCGTCCAGAATCCCAAGCCTATCATGTTCAGAAATGCCGGGGACTCTTCCATAATCGACCGAGGGCTGGCCCTAGCTGAAGACGTGGTTGGCTCGGCCGGCGATCTGTTCGACTACGCAGTGAACGGCGTCCAGAACGCCGCAGACTTGTTCTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
d9c3276be195fd21315c6c8aff6eb0711b9ce41a86a499f76c5a69d8f4b0629e
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,6772
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Phage control of Pseudomonas aeruginosa in water Kauppinen,A., Siponen,S., Pitkanen,T., Holmfeldt,K., Pursiainen,A., Torvinen,E. and Miettinen,I.T. 2021-05-17 — GenBank