Protein

View in Explore
Genbank accession
AKI28800.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MAYITGTAANFADLKTAIENACTSNGWALADGILSKNGCFFQLIADSLGGYPQLRLHGGTGKSGSTLTGQPPSNYGAKIASPVGNQIVFPINYEIHLFTDPDEVYCVINYNSDFYQQLSFGKSDIPGIGGTGAWFTGAYRHDYALADATHSHRVFTAISWGEVTGVATYGGMCVGLFFEGNTSQTGGSYFASFVHTGLDSTPWRSGHGGDTMLSGYRGAGLSVGSLLMSLPNISNQATILLPIKPVARRSSGGATIIANPKNARYLRIDNVVPGEIITFGADQWKVYPFYRKDATVRNGVGWATGATHSGTFGYAIKYTGT
Physico‐chemical
properties
protein length:321 AA
molecular weight: 34068,76280 Da
isoelectric point:7,69744
aromaticity:0,12150
hydropathy:-0,06604

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AKI28800.1
1 321
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,2545
Central domain 11 202 193 0,0037
C-terminal 203 321 118 0,9995
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-202
C-terminal
203-321

Taxonomy

  Name Taxonomy ID Lineage
Phage Stenotrophomonas phage vB_SmaS-DLP_1
[NCBI] 		1642588 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Stenotrophomonas maltophilia
[NCBI] 		40324 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Lysobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AKI28800.1 [NCBI]
Genbank nucleotide accession
KR537872 [NCBI]
CDS location
range 17663 -> 18628
strand +
CDS
ATGGCATACATTACAGGAACAGCCGCAAACTTTGCGGATTTGAAAACAGCCATTGAAAACGCCTGTACTTCTAACGGTTGGGCGCTTGCCGACGGTATATTGTCGAAGAACGGTTGTTTCTTTCAACTAATCGCCGATAGTTTGGGCGGTTATCCGCAACTTCGCTTGCATGGCGGAACAGGCAAAAGCGGTTCGACGCTTACAGGCCAGCCGCCTAGCAATTACGGGGCAAAGATTGCAAGCCCTGTCGGAAATCAAATCGTATTCCCGATTAATTACGAAATACATTTGTTTACCGACCCCGACGAAGTTTATTGCGTAATCAATTACAATTCGGACTTTTACCAACAACTTTCGTTCGGTAAGTCGGATATTCCGGGTATCGGCGGAACTGGCGCATGGTTTACCGGGGCATATCGGCACGACTACGCATTGGCCGACGCAACTCACAGCCATAGGGTTTTTACTGCGATTTCTTGGGGGGAAGTAACCGGCGTCGCAACTTATGGCGGAATGTGCGTCGGTTTGTTTTTTGAAGGCAACACTTCGCAAACTGGCGGAAGTTATTTCGCAAGCTTCGTACATACCGGGCTTGATTCGACGCCTTGGCGAAGCGGCCACGGCGGCGACACAATGTTAAGCGGTTATCGCGGGGCCGGTCTTTCCGTCGGTTCGCTTTTAATGTCACTGCCGAACATTTCGAACCAAGCAACAATTTTGCTTCCGATTAAGCCGGTCGCGCGTCGTTCAAGCGGCGGCGCAACTATTATTGCAAACCCGAAAAACGCCCGTTATCTGCGAATCGACAACGTTGTTCCGGGTGAAATAATTACATTCGGTGCCGACCAATGGAAGGTTTACCCGTTTTACCGCAAAGACGCAACCGTTCGAAACGGCGTCGGTTGGGCAACCGGCGCGACGCATAGCGGAACGTTTGGATACGCCATTAAATACACTGGAACTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
871069dd4a996f22d6077be2be4377a40a9784e7fec5a10523148f8bbc1849d2
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6206
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The isolation and characterization of two Stenotrophomonas maltophilia bacteriophages capable of cross-taxonomic order infectivity Peters,D.L., Lynch,K.H., Stothard,P. and Dennis,J.J. 2015 26335566 GenBank