Protein

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Genbank accession
BDU78948.1 [GenBank]
Protein name
tail fiber domain-containing protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 0,79
TSP
Evidence RBPdetect
Probability 0,72
Protein sequence
MSDKRKDYEERDEGFLGYPLQNESSKRQFYDPWYNDKTDYNTNAPSYYDYLARMHKLIHLLADRIWEYDKELAKRFEEWDKLIEKFPENVEKLLIEWLEDGTLEDIINENIFNDLNNKIDAMQVDFDKKIQDIKDDVDKNIQDIKDHEARMQTLEKRQSKTLKLLYQKRAMSFNLGSRDDELFQGAHRANQGITYIKHQGHEYVFLLHRDSGSGWDEDEKQRITQFEYNNDGLLADTIAISHVIRVGHQGISAFIENGDIYLICGTYNQKGYTKIKWQGNETDQKDVKNYELLEPDSDSSPNSIFYHNTPATDKQGKYIVMSGSARYEGGLRYVLIYNRQEVENALTTKHVKPLNIFKIKALGYINSNIVQDITMDESHIYILHGAAGKRKPIILQTYSLSGEFLGYHTIDTMYNAYSERDIVSGDVSIEPEGISLRGDHVLVEIVNVIKRSNGDISNKILYECSAEPMPDSEPINSGVSPKEVPSNLHLQGNPNDISFTKSDSLQISAYDFENEEFLNALSYNGSHTFSIYDSRDGADNEQRLLLGGYYRDDEQYAIIRSDRSNDKGAGFNLSTNKGGQYGTITFIAPNDSGSDESRAYFSGGTGNFRPGEDNKQSLGGGGHKWKNVYSTNGIQSTSDQRLKKDVENSDLGLDFINDLRAVKYKNIDGKRNHYGIIAQELKETLDQLDIDFGGFQDHNLDENEPLDTYTIGYGELVAPLIKAVQELSKQVEELKKG
Physico‐chemical
properties
protein length:737 AA
molecular weight: 84223,16810 Da
isoelectric point:4,97730
aromaticity:0,10041
hydropathy:-0,77436

Domains

Domains [InterPro]
DC_0378
STR
1–667
DC_0378
Coil
Unmapped
130–157
Coil IPR036388
IPR030392
CHP
638–737
IPR030392
IPR030392
CHP
638–687
IPR030392
DC_1517
RBD
640–736
DC_1517
BDU78948.1
1 737
Architecture
STR
RBD
STR 1-667 | RBD 668-737
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
BDU78948.1
1 737
Domain Start End Length (AA) Confidence
N-terminal 1 232 232 0,7452
Central domain 233 492 261 0,5524
C-terminal 493 737 244 0,9155
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-232
Central
233-492
C-terminal
493-737

Taxonomy

  Name Taxonomy ID Lineage
Phage Tetragenococcus phage phiYA5_2
[NCBI] 		3003628 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Tetragenococcus halophilus
[NCBI] 		51669 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Lactobacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
BDU78948.1 [NCBI]
Genbank nucleotide accession
LC742552.1 [NCBI]
CDS location
range 8737 -> 10950
strand +
CDS
ATGTCAGATAAGAGAAAAGATTATGAAGAACGTGACGAGGGTTTTCTAGGATACCCTTTACAAAATGAATCAAGTAAACGGCAATTTTATGACCCGTGGTATAATGATAAGACGGATTATAATACAAATGCCCCAAGTTATTATGATTATTTAGCCCGTATGCATAAATTGATCCATTTATTAGCTGATAGAATTTGGGAGTACGACAAAGAATTAGCGAAGCGTTTTGAAGAATGGGATAAATTGATTGAAAAATTTCCAGAAAATGTGGAAAAACTTTTGATTGAATGGTTAGAAGACGGGACATTAGAAGACATTATAAATGAAAATATATTTAATGATTTAAACAATAAAATTGACGCTATGCAAGTTGATTTTGATAAAAAAATTCAAGATATTAAAGATGATGTGGATAAAAATATTCAAGATATTAAAGATCATGAAGCAAGAATGCAAACATTAGAAAAAAGACAAAGTAAAACCCTAAAATTATTGTATCAAAAAAGGGCAATGAGTTTTAATTTAGGAAGCCGAGATGATGAATTATTTCAAGGCGCGCACCGAGCAAACCAAGGCATAACTTATATTAAACATCAAGGACACGAATACGTGTTTTTATTACATCGTGATTCTGGTTCAGGTTGGGACGAAGACGAAAAGCAACGAATTACGCAGTTTGAATATAATAATGACGGATTGCTAGCAGACACAATTGCAATATCACATGTCATTCGTGTAGGTCATCAAGGGATTAGCGCTTTTATTGAAAATGGGGATATATATTTAATTTGTGGGACTTATAACCAAAAAGGGTATACAAAAATTAAGTGGCAAGGAAATGAAACGGATCAAAAAGACGTAAAAAATTATGAACTTTTAGAACCTGATTCAGATTCCTCCCCAAATAGTATTTTTTATCACAACACGCCTGCTACGGATAAACAAGGAAAATATATTGTTATGTCAGGTTCTGCAAGGTATGAGGGAGGGTTAAGGTATGTTTTAATTTATAATAGACAAGAAGTTGAAAATGCCTTAACAACAAAACATGTGAAACCTTTAAATATATTTAAAATTAAAGCCCTTGGATATATTAACTCAAATATTGTACAAGATATTACTATGGACGAAAGTCATATTTATATTTTACATGGTGCGGCAGGAAAAAGAAAACCTATTATTTTACAAACGTATAGTTTGAGTGGGGAATTTTTAGGATATCATACAATCGATACCATGTATAATGCCTATTCTGAAAGGGATATTGTTTCAGGTGATGTTAGCATTGAACCGGAAGGAATATCGTTGCGAGGCGATCATGTTTTAGTCGAAATTGTTAATGTCATAAAAAGAAGCAATGGCGACATTTCTAATAAAATTTTATATGAATGCAGTGCTGAACCTATGCCAGATAGTGAGCCGATCAATAGCGGTGTAAGTCCAAAAGAAGTCCCTTCAAATCTTCATTTACAAGGAAATCCAAATGATATTTCTTTTACTAAAAGTGACTCCCTGCAAATTTCTGCGTATGATTTTGAAAATGAAGAATTTCTTAACGCGTTAAGTTATAACGGCAGTCATACATTTTCGATTTATGATAGTAGAGATGGGGCAGACAATGAACAACGATTGCTATTAGGTGGATATTATAGAGATGACGAACAATATGCTATTATTCGTTCAGATCGTTCAAATGATAAAGGGGCAGGATTTAACTTATCCACGAATAAAGGTGGGCAATACGGAACAATAACATTTATAGCCCCTAACGACTCAGGAAGTGACGAAAGCCGTGCCTACTTTTCAGGGGGTACAGGAAACTTCAGACCCGGGGAAGATAACAAGCAAAGCTTAGGCGGGGGCGGTCACAAATGGAAAAATGTTTATTCTACGAATGGCATTCAATCAACTTCAGATCAACGTTTGAAAAAAGATGTTGAAAACAGTGATCTAGGGCTTGATTTTATTAATGATTTGCGCGCGGTCAAATACAAAAATATTGATGGCAAAAGAAACCACTACGGGATTATTGCGCAAGAATTAAAAGAAACATTAGATCAATTAGATATTGACTTTGGAGGTTTTCAAGATCATAATCTTGATGAAAACGAACCATTAGACACTTATACTATTGGTTATGGTGAATTAGTTGCCCCTTTAATTAAAGCAGTGCAAGAGTTATCTAAACAAGTAGAAGAATTAAAGAAAGGCTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
63deb16379ee4d1aec822325ebf390c31f0f4a2961c51f97836f8ac76e7a2921
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6474
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Identification of capsular polysaccharide synthesis loci determining bacteriophage susceptibility in Tetragenococcus halophilus Wakinaka,T., Matsutani,M., Watanabe,J., Mogi,Y., Tokuoka,M. and Ohnishi,A. 2023 37154759 GenBank