Protein

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Genbank accession
YP_010053058.1 [GenBank]
Protein name
tail protein
RBP type
TF
Evidence RBPdetect2
Probability 0,53
Protein sequence
MPVIHVQKMPGTPKETGIVPAGTNLWKWLNKSNLPASISITVNGRVLGEDDELSFCLRDGDVVNVYCQPSGAIGDLIGAILKPVTKIFSFLTPKVSTPKTDTSSKTSPNTSLKAQTNIARNGEARPDNFGQIRAFPDLLQESLFEYINNIKYVTEFMNFGLGKYDVSSVRYSESNLGSLAGASYTIYQPGEVIPVVYEPYAFDDVDGQELYGPNELDTDPPPVVIETATTTTVTETEFAGGQIAVKIPKDPAFNYFVDLTMPHDVVFKLNITYAQGGGASVTENVTLSGRLVSATETDDGGLPPANYWYTFIINSINYSGAPISSLSGVTINNTYFNLTDNQPIVSGPYFSPIDGDQLWVHLQHQTNDGNDFSVLIEWWKIDDDNVQIPGTYQSMNYYRDVDRNDTFYYTIKLTPSAGTGRYAIQMRRTNNSSDTSILQLEEIHSIVTRTNVSYSDDTVVKVVVRATENATGSRDRKYNALITRHTIGYNRDAGTVRYTLAPSRSFADAVLHNWLITAGNPENTIDIVRLYEIADSLPDERLGYFDYTFDDEDKSIGERLQTICDAARVTAFWDDGVMSFSRDEKRDYPATVFNTRNTQSDGYKLSYDISLPGTYDGVNVEYRDPTTNKQANVYYRITDSGIVEGEPTKAKKFDMLYVRNRYQAVDRAILECRRLIYSRRSMEIKALADGEWVNVGDMIQVVDMYDDVQQTGVIEARNGNTFTTSEQLTADDNLYVVITSSDGSVSGRLPATVTGLHTFTCNLPSDFQLNIWDGTSVQSESRYVLSTEKELDTTLWVVSQKNPGSDGTTTLTMSEYSDEMYEYVISSS
Physico‐chemical
properties
protein length:828 AA
molecular weight: 92225,28080 Da
isoelectric point:4,57465
aromaticity:0,10266
hydropathy:-0,38490

Domains

Domains [InterPro]
DC_0118
STR
1–670
DC_0118 DC_0808
NF040662
Unmapped
356–822
NF040662
YP_010053058.1
1 828
Architecture
STR
RBD
STR 1-670 | RBD 686-827 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Shigella phage Sf11 SMD-2017
[NCBI] 		2282196 Uroviricota > Caudoviricetes > Cedarrivervirus >
Host Shigella flexneri
[NCBI] 		623 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010053058.1 [NCBI]
Genbank nucleotide accession
NC_054636 [NCBI]
CDS location
range 10536 -> 13022
strand -
CDS
ATGCCAGTAATTCATGTTCAGAAGATGCCGGGCACGCCGAAAGAAACGGGGATTGTGCCAGCGGGTACAAACCTGTGGAAGTGGCTTAATAAATCCAACCTGCCAGCCAGCATTTCAATTACGGTAAACGGCAGGGTGCTTGGTGAAGATGATGAGCTTTCATTCTGCCTGCGCGATGGCGACGTGGTAAATGTTTATTGCCAGCCATCCGGCGCAATAGGAGACCTTATCGGTGCGATACTGAAACCAGTAACGAAGATTTTCTCATTCCTTACACCGAAAGTATCAACGCCAAAAACGGATACCAGCTCGAAAACATCACCTAACACCAGCCTGAAAGCGCAGACCAACATCGCGCGCAACGGCGAGGCGCGCCCTGATAACTTCGGGCAGATTCGCGCGTTCCCTGATTTGCTTCAGGAGTCTCTATTCGAATACATCAATAATATTAAATATGTCACTGAGTTCATGAACTTTGGCCTCGGTAAGTATGATGTATCATCCGTTCGTTACTCAGAATCAAACCTCGGATCACTGGCTGGTGCGAGCTATACAATTTATCAGCCGGGAGAAGTTATTCCTGTTGTGTACGAACCTTACGCATTTGATGATGTTGATGGGCAGGAGCTTTACGGACCAAACGAACTGGATACCGACCCGCCACCAGTGGTCATTGAGACTGCAACAACTACCACGGTAACGGAAACGGAATTTGCTGGCGGTCAGATAGCAGTCAAGATACCAAAGGATCCGGCATTTAATTACTTCGTTGACTTAACCATGCCTCATGATGTGGTGTTTAAGCTGAATATCACTTACGCGCAAGGTGGCGGCGCATCTGTAACCGAAAACGTTACGCTATCAGGCAGACTTGTATCTGCAACAGAAACTGACGATGGCGGGCTGCCACCAGCAAACTACTGGTACACATTTATTATTAACAGCATCAACTACTCAGGCGCACCAATATCATCACTGAGTGGCGTGACGATTAATAACACCTATTTCAATCTGACAGATAACCAGCCGATTGTTTCCGGTCCGTACTTTTCACCGATTGATGGTGATCAGCTTTGGGTGCACCTGCAACACCAGACCAATGATGGCAATGATTTCAGCGTGCTCATTGAGTGGTGGAAGATTGATGACGATAACGTTCAGATTCCCGGAACATATCAGTCAATGAACTATTATCGGGACGTGGACAGAAACGACACGTTCTATTACACGATAAAGTTAACCCCATCTGCTGGCACCGGTCGATATGCGATTCAGATGCGACGGACAAACAACAGTTCCGACACGTCAATCCTTCAGCTTGAGGAAATTCACTCAATCGTCACGAGAACAAACGTCTCGTATTCAGATGACACCGTGGTTAAGGTTGTCGTGCGAGCAACAGAGAACGCCACAGGCAGCCGTGACAGGAAATATAATGCATTAATAACGCGCCATACCATCGGATACAACCGAGATGCTGGCACGGTGCGCTACACACTTGCGCCATCACGCAGCTTTGCTGATGCTGTTCTGCATAACTGGCTAATTACCGCTGGCAATCCAGAAAACACGATCGACATCGTGAGGCTGTATGAAATTGCCGATAGCCTTCCTGATGAGCGACTTGGTTATTTCGATTACACGTTTGACGATGAGGATAAGAGTATCGGCGAACGCCTGCAGACAATATGCGACGCGGCTCGTGTTACTGCATTCTGGGATGATGGCGTGATGAGCTTCTCTCGTGATGAAAAGCGAGACTATCCGGCAACTGTATTCAACACCAGAAACACGCAGAGCGACGGGTACAAGCTGAGTTATGACATTAGCCTTCCCGGCACTTATGATGGCGTTAACGTCGAATATCGCGACCCAACAACAAATAAGCAGGCCAACGTTTATTATCGAATTACCGATAGCGGAATAGTCGAAGGCGAGCCAACTAAAGCGAAGAAATTCGACATGCTTTATGTGCGCAACCGCTATCAGGCTGTTGATCGCGCAATCCTTGAATGTCGCAGACTGATTTATTCTCGTCGCAGCATGGAGATTAAAGCACTGGCGGATGGAGAGTGGGTTAACGTAGGCGACATGATTCAGGTTGTCGATATGTATGATGATGTGCAGCAGACTGGCGTTATTGAGGCGCGCAACGGAAACACGTTCACAACCAGTGAGCAGTTAACCGCTGATGACAATCTCTACGTTGTGATTACCAGTTCTGATGGCAGCGTGTCAGGCAGATTGCCAGCAACAGTAACCGGATTGCATACATTCACATGCAACCTGCCGTCTGATTTTCAGCTAAATATATGGGACGGAACGAGCGTGCAATCTGAATCTCGTTACGTTCTGAGCACAGAGAAAGAACTGGACACCACTTTGTGGGTTGTCAGTCAGAAGAATCCCGGTAGCGACGGCACAACGACGCTGACGATGAGTGAATACTCTGATGAGATGTACGAATATGTCATCTCGTCATCGTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
b43c2ff9c9209dd3d1845c277da0facb84ca2ead500998f237e67ad468592850
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3069
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The isolation and characterization of 16 novel Shigella-infecting phages from the environment Doore,S.M., Schrad,J.R., Dover,J.A. and Parent,K.N. 2020-09-29 — GenBank