Protein

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Genbank accession
QDH50723.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
TSP
Evidence RBPdetect2
Probability 0,93
Protein sequence
MYGQTGIVSATAFYGDGSNLTGVVGLVSVTNILFVTPDGNDENDGYLVSSAKRTVGSALTVAETSTVIKISAGNYSENNPIILPEQVTLLGDSLREVSIIPQNPDEDLIYVANGSYVENLSFTGSLNEGKAIIAFNPDKPSYVTQGPYIRNCTNFISNSIGMKIDGRHVIGDTRAMNVDSYTQLNQGGIGVSISNEGYAQLVSIFTIYNDQSIVCTSGGQCDLTNSNSSFGRLGLVADGIGPQGFIGTVTEAKAAGTNIFPLDIGVDTLTITNAEYDNVTGLTTITTSTNHGFNVGMSVTMKDMTFTCDSQLPVTSFGISTANYDRVSGIMTVQTSVDNNFYVGASVTFAQLVFSCDSGGGVSTAYFPPAPGDNNGAPNHVFDVITVGTSTEFTVNVGPSTITHNYQEGGNVSISTFAPFPSGAYGNIFTVDSVPSNTQFRAYVGVSTLAHTYVSGGEVETFVTRPYDGQVVYLDELYSSISGVTITNGGSGYATPPVVTFSAPSESWGITATGVARLTDGVVTSIDMISNGRGYTGTPTVNIDGAATGTPVILPTYYVVSSATPVVGGISTVTFTENVPYAVGVGTTVPFFKQSRVLASSHAFEYIGSGNTALSALPQRGGVAKPENEVTSKNGGLVIYTSTDQAGNFKIGDGVIINQLEGSITGDAYQRSLFANITPYILALGGGD
Physico‐chemical
properties
protein length:688 AA
molecular weight: 71632,55350 Da
isoelectric point:4,32041
aromaticity:0,09012
hydropathy:0,06962

Domains

Domains [InterPro]
DC_0066
STR
4–678
DC_0066
IPR011050
STR
51–193
IPR011050
QDH50723.1
1 688
Architecture
STR
STR 4-678 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QDH50723.1
1 688
Domain Start End Length (AA) Confidence
N-terminal 1 84 84 0,9343
Central domain 85 362 279 0,8560
C-terminal 363 688 325 0,1061
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-84
Central
85-362
C-terminal
363-688

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-B43
[NCBI] 		2484638 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Synechococcus sp. MW02
[NCBI] 		1620844 Cyanobacteriota > Cyanophyceae > Synechococcales > Synechococcaceae > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QDH50723.1 [NCBI]
Genbank nucleotide accession
MN018232.1 [NCBI]
CDS location
range 209293 -> 211359
strand -
CDS
ATGTATGGTCAGACTGGTATTGTCAGTGCAACAGCATTCTATGGTGATGGTTCAAACCTGACTGGTGTTGTTGGTCTGGTATCTGTCACCAACATTCTATTTGTTACCCCTGATGGTAATGACGAAAATGATGGTTATCTGGTATCATCTGCGAAGAGAACTGTTGGTTCTGCACTGACTGTTGCTGAAACTTCTACAGTCATTAAGATTTCTGCTGGTAATTATTCAGAAAACAACCCAATCATTCTTCCAGAACAGGTCACACTTCTTGGTGACAGTCTGAGAGAAGTTTCAATCATCCCACAAAACCCAGATGAAGACCTCATCTATGTTGCAAATGGTAGTTATGTAGAAAATCTTTCATTCACTGGTTCATTGAATGAAGGTAAGGCAATTATCGCATTCAACCCTGATAAGCCATCATATGTAACACAGGGTCCTTACATCCGTAACTGCACCAACTTCATCTCAAATAGTATTGGTATGAAGATTGACGGTAGACACGTCATTGGTGATACCAGAGCAATGAATGTTGACTCCTATACTCAACTTAATCAGGGTGGTATTGGTGTTTCAATCTCCAATGAAGGTTATGCACAGTTAGTTTCAATCTTCACAATCTACAATGACCAGAGTATTGTTTGTACTTCTGGTGGTCAATGTGACCTAACTAACTCCAACTCTTCCTTCGGTAGATTGGGTCTCGTTGCTGATGGTATTGGACCACAAGGTTTCATCGGTACAGTCACAGAAGCAAAAGCAGCAGGTACAAATATCTTCCCACTTGACATTGGTGTTGACACACTTACTATTACTAATGCTGAATATGATAATGTAACTGGTCTGACCACAATTACAACATCAACTAACCACGGTTTCAATGTTGGTATGTCAGTCACAATGAAGGATATGACCTTCACATGTGATTCACAACTTCCTGTCACATCATTCGGTATTTCGACCGCAAATTATGACAGAGTAAGTGGTATTATGACTGTTCAGACATCAGTCGATAATAACTTCTACGTTGGTGCAAGTGTTACTTTCGCCCAATTAGTATTCAGTTGTGATTCTGGTGGTGGTGTTTCCACTGCATACTTCCCACCTGCCCCTGGTGACAATAATGGTGCTCCAAATCATGTATTTGATGTTATCACAGTTGGAACTTCCACAGAGTTCACAGTCAACGTTGGTCCATCAACTATTACACACAATTATCAGGAAGGTGGAAACGTAAGTATCAGTACATTTGCTCCATTCCCAAGTGGTGCTTATGGAAATATCTTTACGGTGGATTCTGTACCATCTAACACACAATTCAGAGCTTATGTTGGTGTCTCTACATTAGCACACACATATGTTAGTGGTGGTGAGGTAGAAACCTTTGTTACTAGACCTTATGATGGTCAGGTTGTATATCTGGATGAATTGTATAGCTCTATCAGTGGTGTCACAATTACTAATGGTGGTTCAGGATATGCAACTCCACCAGTTGTCACATTCTCTGCACCATCTGAATCCTGGGGTATCACTGCAACAGGTGTCGCAAGACTCACTGATGGTGTTGTAACATCAATTGACATGATTTCAAATGGTAGAGGTTATACAGGAACTCCTACTGTTAATATTGATGGTGCTGCTACTGGCACCCCTGTTATCTTACCTACATACTATGTGGTTAGTAGTGCTACTCCTGTAGTTGGGGGTATCTCTACAGTCACCTTTACTGAAAATGTACCTTACGCGGTTGGTGTAGGAACAACAGTTCCATTCTTCAAACAGAGTAGAGTACTTGCTTCAAGCCACGCATTTGAATACATCGGTTCTGGAAATACTGCTCTTTCCGCACTCCCACAAAGAGGTGGTGTAGCAAAACCAGAAAATGAAGTTACAAGTAAGAATGGTGGTCTGGTCATTTACACATCAACTGACCAGGCAGGTAACTTTAAGATTGGTGATGGTGTTATTATTAATCAATTGGAAGGTTCTATCACAGGTGACGCATATCAAAGATCTCTGTTTGCAAACATTACACCTTATATTCTCGCATTAGGAGGAGGAGACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
0ce052d92501f9c4ef9e1f8ca8c5a8ab821030cd8ae007d69c74b7a491b8b0cb
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6205
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation, characterization and genome sequencing of the novel cyanophage S-B43 from the Bohai Sea, China Wang,M. 2020-10 — GenBank