Protein

View in Explore
Genbank accession
UYD60570.1 [GenBank]
Protein name
baseplate wedge protein
RBP type
TSP
Evidence DepoScope
Probability 0,56
Protein sequence
MELIKIGQVVDDGQGDYLRRGGQKVNDNFTELFTQLGDGDRPFAAGAWKNHTTGVLKPKFGESWAVNTSSGAISVNLPKGSVTDYNKAIKLRDVWSTWANQNVTLYAATGDTLKGSPLPRRLDKNLMDIELVYCAPGRWEYVENKRVDRITTSDLSTVAKREILVETDGQTDFPDVFGSSNYNIGNIEVYLRGNLLYYGSELSSNSNYGSIDPASPTGIIPLDGRSIRIRGIEILAGDTITFVTYMDGIASYRSSYNTRSVQVFSTADSAKTSVAGEIWVGDIATKNSFSIEEIGIEMNNRINPNSLEVLINGILMSRAGDGDLPMFVCEGAVGENQADCQANGGNWVPSAIDYAMVLDDSGNVSQINFGNPFESGDMVTFRWFNNDIGTLLDWDGINGIKEKADQVYLNAEQQVTIQNSIEYTDFDNPSQKTAEVVPGVFTGRLDTIQMFFDSIYPIGTIYENANNPANPRDYMGLGVWKRYAEGKIVAGWTSNQADIEFSMNNNDLDSGGNPSHTAGGTYGAKSVELAPLNIPEISSTDKVLVSHPDGNIIIGGCLIDPDASGPGYTKYIESVLAVNKGNLSPANISILPPIITAYKWVRVG
Physico‐chemical
properties
protein length:604 AA
molecular weight: 65719,48380 Da
isoelectric point:4,53970
aromaticity:0,09106
hydropathy:-0,27864

Domains

Domains [InterPro]
IPR034695
Unmapped
1–604
IPR034695
DC_2238
STR
1–586
DC_2238
IPR036240
STR
2–230
IPR036240 IPR054430 IPR053827
IPR008987
ATT
3–146
IPR008987
G3DSA:1.20.5.960
Unmapped
13–45
G3DSA:1.20.5.960
UYD60570.1
1 604
Architecture
ATT
STR
ATT
ATT 1-146 | STR 147-450 | ATT 451-603 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
UYD60570.1
1 604
Domain Start End Length (AA) Confidence
N-terminal 1 196 196 0,9608
Central domain 197 440 245 0,3521
C-terminal 441 604 163 0,9537
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-196
Central
197-440
C-terminal
441-604

Taxonomy

  Name Taxonomy ID Lineage
Phage Aeromonas phage avDM2
[NCBI] 		3101606 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Aeromonas hydrophila
[NCBI] 		644 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Aeromonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
UYD60570.1 [NCBI]
Genbank nucleotide accession
OP380605 [NCBI]
CDS location
range 153444 -> 155258
strand -
CDS
ATGGAACTAATCAAAATTGGACAAGTTGTCGATGACGGCCAAGGCGATTATCTGCGCCGTGGCGGTCAAAAGGTTAATGACAACTTTACCGAGTTATTCACACAATTGGGCGACGGTGATCGCCCATTCGCTGCAGGTGCCTGGAAAAACCATACAACTGGTGTCCTTAAACCGAAATTTGGCGAGTCATGGGCAGTCAACACATCATCTGGCGCTATTTCCGTAAACTTGCCTAAGGGATCGGTGACCGATTACAATAAAGCAATTAAACTGCGCGACGTTTGGTCCACGTGGGCTAACCAAAACGTGACATTATACGCTGCTACTGGCGACACTCTTAAAGGTTCTCCGCTTCCTCGTCGTTTAGACAAAAACTTAATGGACATTGAGTTAGTTTATTGCGCTCCTGGAAGATGGGAATACGTTGAAAATAAGCGGGTTGACCGAATCACGACATCTGACCTCAGCACCGTAGCCAAACGTGAAATATTGGTCGAAACTGATGGCCAGACTGATTTCCCAGATGTTTTTGGTTCATCGAATTACAACATCGGAAACATCGAAGTTTATCTCCGTGGTAACCTTCTGTATTATGGAAGCGAGTTGTCTTCAAACTCAAACTACGGTTCTATCGACCCGGCAAGCCCGACTGGCATTATTCCGTTGGATGGCCGAAGTATTCGCATACGCGGTATCGAAATACTTGCAGGCGATACCATCACATTCGTGACATATATGGACGGTATCGCGTCATACCGTAGCTCGTACAATACACGAAGCGTTCAGGTATTTTCAACTGCTGATAGCGCTAAAACATCAGTTGCTGGTGAGATTTGGGTCGGTGATATCGCAACAAAGAACAGTTTCAGTATCGAAGAAATTGGTATTGAAATGAACAATCGTATAAACCCAAACTCACTTGAAGTCCTCATTAATGGCATATTGATGTCACGGGCAGGCGATGGTGATTTGCCTATGTTCGTTTGTGAAGGCGCGGTTGGTGAAAACCAAGCAGACTGTCAGGCAAACGGCGGGAACTGGGTGCCGTCAGCAATTGACTATGCTATGGTCCTTGATGATAGTGGAAACGTTTCACAAATCAACTTTGGAAATCCTTTCGAATCAGGAGATATGGTAACATTCCGCTGGTTCAACAATGATATCGGAACATTGCTTGATTGGGATGGGATTAACGGGATAAAGGAAAAAGCTGACCAGGTTTACCTGAATGCTGAGCAGCAAGTCACTATTCAGAACAGCATCGAGTACACTGACTTTGACAATCCGAGCCAGAAAACTGCTGAGGTAGTTCCAGGGGTTTTCACTGGACGACTGGATACAATCCAGATGTTCTTTGACTCTATATACCCAATAGGAACTATTTACGAGAATGCCAACAACCCTGCCAACCCTCGTGACTACATGGGTTTAGGTGTATGGAAAAGATACGCTGAAGGCAAAATTGTGGCTGGTTGGACGTCAAACCAAGCTGATATTGAATTCAGCATGAACAACAACGATCTGGATAGCGGCGGTAACCCGAGTCATACGGCTGGCGGAACATACGGTGCAAAATCTGTTGAACTGGCTCCGTTGAATATCCCTGAGATATCGTCAACCGACAAAGTTCTTGTTAGCCACCCAGATGGAAACATAATCATCGGCGGATGTTTGATTGACCCGGACGCGAGCGGCCCTGGATACACAAAATATATAGAATCTGTTTTAGCAGTTAATAAAGGCAACTTGTCACCTGCTAACATAAGCATTCTTCCACCGATCATCACCGCATATAAATGGGTAAGGGTAGGATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
43bd9b513dc68ef879a2f9b4826757f94917a1e627407b12c8cd2259d7a1df4e
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6504
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
On Diversity and Genetic Richness: Insights on Aeromonad Phage Diversity through Physicochemical and Molecular Analysis Papa,D.M., Rousseau,G., Tremblay,D., Labrie,S., Gutierrez,T.A., Ramos,J.D. and Moineau,S. 2024-03-24 — GenBank