Protein

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Genbank accession
YP_009784224.1 [GenBank]
Protein name
colanic acid degradation
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MARDVYADIGMPSTPFLRLDRFAALVNGKIYVGVKDTDPLNPANQTQVFVEDEDGTLTPIPQPVRTNVSGYPVWNGQVVKLITKIESSMKVMDANDVQQFYFGNLFKYDPVQMWNLLTSPTGWEYVGTNYGVLKESIQGWITPFQFVGKAPFTSVSAAIQTMFDTAQAQKLAVWAIGWEGTLDGNVTATDILIMGGTWKGTPDFFMDNSTLKGATIKNARIRVWGGDVRIRDCLFDGKPTTSKVASVMMQALPKNATVEVTESEFRNGLYGILQQGTGELVTRGLYRNLSFYDMGGDGIELNVVQRHYDDGCVIENIYLENIDSTGQAPINPSNWGIGIGVAGQSPYGIDTPDENFAKNITIRNVTGVGVRQLVHFEMVRDSVIENINGDPDQNVSNGSGLTLATVLCYGSRRVSIDGVRGEPIVTSGTLASDVRVVMLEWGTNAGVGARGPCQDMTVRNVYSKTGRFYAGVGTEKAGATNRCRFSNINVAKFSVFGVATELDLNDISGDIFDAIGDDSSGGTPSNGYIAGGRTVLRMNNVNFGAYPDQGWSRCAYSQIDCVNSNVFARPYPRSGTNGGVGAEMQPSNHTYLIPTPDQMDGVGIWDGNAFPTGREFMEGDLLVRNDGKIFAVETSGAYLPAVAELQIKATAAGQTYLAQNYAMAGNKSDQVWFYKTPLTQGTRVTIPGAGAGGAPLNTVITRAPYSTNPSNPTAEIRIDIADAIVTATVAGVQLAATKPISFRTPA
Physico‐chemical
properties
protein length:746 AA
molecular weight: 80358,51280 Da
isoelectric point:4,96241
aromaticity:0,09115
hydropathy:-0,16381

Domains

Domains [InterPro]
IPR036730
ATT
4–110
IPR036730 DC_0354 IPR023882 DC_0045
IPR036730
ATT
4–100
IPR036730 IPR011050
IPR036730
ATT
8–108
IPR036730
IPR009093
ATT
9–111
IPR009093
YP_009784224.1
1 746
Architecture
ATT
ATT
STR
RBD
ATT 4-111 | ATT 124-182 | STR 183-387 | RBD 388-745 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009784224.1
1 746
Domain Start End Length (AA) Confidence
N-terminal 1 152 152 0,9925
Central domain 153 611 460 0,9873
C-terminal 612 746 134 0,8139
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-152
Central
153-611
C-terminal
612-746

Taxonomy

  Name Taxonomy ID Lineage
Phage Enterobacteria phage IME_EC2
[NCBI] 		1414766 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009784224.1 [NCBI]
Genbank nucleotide accession
NC_047742 [NCBI]
CDS location
range 13993 -> 16233
strand -
CDS
ATGGCCCGCGACGTATACGCTGATATTGGTATGCCTTCGACGCCTTTCCTACGTCTGGACCGCTTCGCGGCGCTGGTCAACGGGAAGATCTACGTAGGCGTGAAAGATACCGACCCGCTGAACCCAGCGAACCAGACCCAGGTCTTTGTCGAGGACGAGGACGGAACGCTGACGCCAATCCCGCAGCCAGTACGGACCAACGTCTCCGGCTATCCGGTCTGGAACGGTCAAGTAGTCAAACTGATCACCAAGATCGAATCATCCATGAAGGTGATGGACGCGAACGACGTCCAGCAATTCTATTTCGGGAACCTGTTCAAATATGATCCGGTCCAGATGTGGAACCTTCTCACCTCGCCGACGGGCTGGGAGTACGTGGGGACGAATTACGGCGTTTTGAAAGAGTCGATTCAGGGCTGGATCACTCCTTTTCAGTTCGTCGGGAAAGCGCCATTCACCAGCGTGTCCGCAGCCATCCAGACCATGTTTGACACGGCTCAGGCCCAAAAGCTGGCGGTCTGGGCCATTGGCTGGGAGGGAACGCTGGACGGCAACGTGACCGCGACGGATATCCTCATCATGGGGGGAACGTGGAAAGGTACGCCGGACTTTTTCATGGACAATTCCACGCTGAAAGGCGCGACCATTAAAAACGCCCGTATTCGCGTATGGGGCGGCGACGTAAGGATCCGGGATTGCCTGTTTGACGGCAAGCCGACCACGAGCAAGGTCGCAAGCGTAATGATGCAAGCCCTACCGAAAAACGCGACTGTGGAAGTCACGGAGAGCGAGTTCCGCAATGGCCTTTACGGCATCTTGCAGCAGGGGACCGGGGAACTCGTCACGCGTGGCCTGTATCGTAACTTGTCGTTTTACGACATGGGCGGCGACGGGATCGAGCTTAACGTGGTGCAGCGCCACTATGACGACGGTTGCGTGATCGAAAATATCTACCTGGAGAACATCGACTCCACCGGACAGGCTCCGATCAACCCGTCCAACTGGGGGATCGGGATCGGCGTCGCTGGTCAATCTCCGTATGGTATCGACACGCCTGACGAGAACTTTGCGAAGAACATCACGATCCGCAACGTGACGGGCGTCGGCGTCCGCCAGCTTGTTCACTTCGAAATGGTCCGCGACTCCGTGATCGAGAACATCAACGGCGACCCGGATCAGAACGTGTCTAACGGCTCCGGCCTGACGCTGGCGACGGTCCTCTGTTATGGCTCGCGCCGCGTGTCGATCGATGGCGTTCGCGGGGAGCCGATCGTGACCTCCGGGACCCTGGCCTCCGACGTCCGCGTGGTTATGCTGGAGTGGGGGACTAACGCCGGAGTGGGCGCTCGTGGTCCTTGCCAGGACATGACCGTGAGGAACGTCTATTCCAAGACCGGGCGCTTTTACGCTGGCGTGGGTACGGAAAAGGCCGGAGCAACCAACCGTTGCCGATTCAGTAACATCAACGTGGCTAAATTCTCCGTTTTCGGCGTGGCTACCGAACTGGATTTAAACGATATCTCCGGCGATATCTTCGACGCGATCGGGGATGATTCCAGCGGCGGGACGCCTTCGAATGGTTATATCGCTGGCGGTCGCACCGTGTTACGCATGAATAATGTTAACTTCGGCGCGTACCCGGATCAGGGCTGGAGCCGTTGCGCATACAGCCAGATTGATTGCGTTAATTCGAACGTGTTCGCCCGTCCGTACCCTCGTTCGGGGACTAACGGCGGCGTAGGCGCTGAAATGCAGCCCTCTAACCATACTTACCTGATCCCGACTCCTGACCAGATGGACGGCGTAGGGATCTGGGATGGTAACGCGTTCCCGACCGGGCGCGAGTTCATGGAGGGCGATCTCCTGGTCCGCAACGATGGCAAGATCTTTGCCGTCGAGACGTCCGGCGCATACCTCCCGGCGGTCGCAGAATTGCAGATTAAAGCGACGGCAGCGGGCCAGACCTACCTCGCGCAAAATTACGCGATGGCTGGCAACAAGTCGGATCAGGTCTGGTTTTATAAGACCCCGCTTACGCAGGGGACCCGCGTCACGATCCCCGGAGCCGGGGCTGGCGGCGCTCCGCTTAACACGGTGATCACTCGCGCACCGTACAGCACCAACCCAAGCAACCCGACCGCAGAGATCAGGATCGACATTGCGGACGCTATCGTGACGGCAACCGTGGCGGGCGTTCAACTGGCGGCAACGAAGCCGATCTCCTTCCGAACTCCGGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
8ccad70a5d9627a912d7a19754417dbec5a0d21cd3240346109881fee90b594a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6961
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50