Protein

View in Explore
Genbank accession
AYP28166.1 [GenBank]
Protein name
tail collar domain-containing protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence RBPdetect
Probability 0,87
Protein sequence
MSKISLSSNASGTGVITIASPNSNTNRTITLPDADGEISLGGTPVGTLIYFAASTPPTGFVKANGAAVSRTTYADLFAVIGTTWGVGDGSTTFNLPDLRGEFVRGWDDARGVDSGRSFASAQADEIESHRHRVWGLAGGPIAVVGSQTRSFMGGQSGNWTDGYGGNHIENTGGTETRPRNIAALACIKY
Physico‐chemical
properties
protein length:189 AA
molecular weight: 19557,30640 Da
isoelectric point:5,86711
aromaticity:0,07937
hydropathy:-0,20635

Domains

Domains [InterPro]
DC_1413
STR
2–189
DC_1413
IPR037053
ATT
38–99
IPR037053
SSF88874
STR
43–189
SSF88874
IPR011083
ATT
46–103
IPR011083
AYP28166.1
1 189
Architecture
STR
ATT
STR
STR 2-37 | ATT 38-103 | STR 104-189
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Lentibacter phage vB_LenP_ICBM1
[NCBI] 		2847822 Uroviricota > Caudoviricetes > Zobellviridae > Siovirus > Siovirus germanense
Host Lentibacter sp.
[NCBI] 		2024994 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Alphaproteobacteria > Rhodobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AYP28166.1 [NCBI]
Genbank nucleotide accession
MF431617 [NCBI]
CDS location
range 36099 -> 36668
strand -
CDS
ATGAGCAAGATTTCGTTAAGTTCAAATGCGTCAGGCACAGGTGTAATCACCATTGCCTCGCCTAATAGCAATACAAACAGAACTATTACCCTACCAGACGCAGATGGTGAGATCAGCTTGGGCGGAACCCCTGTTGGCACTCTCATCTACTTTGCGGCCTCTACGCCACCAACAGGCTTTGTGAAGGCAAACGGCGCAGCCGTGTCACGGACAACCTATGCGGACCTGTTTGCCGTTATCGGCACAACTTGGGGTGTGGGAGATGGCAGCACAACATTCAACCTTCCTGACCTGCGTGGTGAGTTTGTGAGGGGTTGGGATGACGCCCGTGGTGTAGACAGTGGACGCAGCTTTGCCTCGGCTCAGGCGGACGAGATTGAAAGTCATAGGCACAGGGTTTGGGGCCTTGCTGGCGGACCAATCGCCGTTGTCGGCTCTCAGACCAGATCATTCATGGGTGGGCAATCTGGTAACTGGACAGATGGCTACGGCGGAAACCACATTGAGAATACTGGCGGCACAGAGACACGCCCACGCAACATTGCAGCACTAGCCTGCATCAAATACTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
f51b1f2ed61b5401108704e7acf231d704cde2cd311453f8f04b5842c184f956
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7385
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50