Protein

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Genbank accession
WDS30421.1 [GenBank]
Protein name
putative glycosyl hydrolase
RBP type
TSP
Evidence RBPdetect
Probability 0,89
Protein sequence
MADVLEGLAPKHYHGQNQVWYENGKQYIAVNVGEDDDPVYQYREVLYRWIGNNNRWYLAYSNNPDSVGTVSLDNARYFTGAPYRGDVALFGDGLKELPDPLPFFTGSQYKLYSNGADTLENYVNFGYEGTANPYGIDNIYRMCKLRQANAQYLYTVTRPGQEGFNWGVGAFVGTIPTAIYPNIWSLQFRLGDFVDGQDRMWLLYGGSNVTWTEQGTGQQKSAQISFGAHVSRSGELMYYRRFNSTYVYARVQLASLSGWHQVQLTQDANHNCTITVDKGTPNEQSASCSLKLWGKQFDSVLFNCGPECVGTTGVPITDVYDKSWIGNIDIRRFYIDTHGTFNENVIPRYYEQPYLNIEIQAEGSSTWQDVSSSLVNWPHEQDNRRCIYTLPDVPDGQYFIRYKTNYGVSNTLPVRIKGDISRKTELYSDFSDLIEMRENWLVAHKQWGGTGVVGNQTALLNGGVVRENVEVYPDYSDVANAVKGVLRLRGHGTYYDGDVIGVDRIGHPAPDGRKTEVGSALVTREYLGPGSFRCKLRSPYRKGAATALWTFHYEEIYENDPRWQSFLDEGLHAQGNEDDGYYIVRNHEIDIEYPTALKDAVDMEDVSADKARLNTWEGELRTWDLPESDPNYFSEYTDFFEKWVDEALSDGKWHEIRFDWHTGEQNPPAGKPAKRVDFYVDGVLKWTNTTHIPDIPGRLWIALWYPRAPGNRWAGHSADYIYDSIDVDYFHYIPFPDEPVRQLGETYPADVWRDWKWENFFSGFYNELPPPYELPKPYDDDMPKDADGTWLPTSYLAAGKNPPQYITPYRLEWRNDRKLQGSGNGEFQFLNLVQGARYKMTIKVARTSTQAAGLQLVTFEPGNDVIDISMFEGDTYELTFIAQSQQRVALRRNTTDNKYEGLTDIRLERI
Physico‐chemical
properties
protein length:910 AA
molecular weight: 104321,33810 Da
isoelectric point:4,96991
aromaticity:0,14066
hydropathy:-0,62626

Domains

Domains [InterPro]
DC_0211
ATT
1–428
DC_0211 cd00413 DC_0213
G3DSA:2.60.120.200
STR
461–733
G3DSA:2.60.120.200
G3DSA:2.60.120.200
STR
461–735
G3DSA:2.60.120.200
IPR013320
STR
518–727
IPR013320
WDS30421.1
1 910
Architecture
ATT
ENZ
STR
RBD
ATT 1-428 | ENZ 429-460 | STR 461-735 | RBD 736-910
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WDS30421.1
1 910
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,7564
Central domain 11 209 200 0,9235
C-terminal 210 910 700 0,2153
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-209
C-terminal
210-910

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage SSJ01
[NCBI] 		2973488 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio parahaemolyticus
[NCBI] 		670 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WDS30421.1 [NCBI]
Genbank nucleotide accession
OP117450 [NCBI]
CDS location
range 33576 -> 36308
strand -
CDS
ATGGCTGATGTACTAGAGGGTTTAGCCCCTAAGCATTACCACGGTCAGAATCAGGTTTGGTACGAAAATGGCAAACAGTACATTGCGGTGAACGTCGGTGAAGACGACGACCCAGTGTATCAGTACCGCGAAGTGCTTTACCGCTGGATTGGTAACAACAACCGCTGGTACTTAGCCTATAGCAATAATCCTGACTCTGTAGGCACAGTGAGCCTTGATAACGCACGTTACTTCACAGGTGCGCCTTATCGTGGCGACGTAGCCTTGTTTGGTGATGGTCTGAAAGAACTACCAGACCCACTCCCATTCTTCACAGGCTCACAATACAAGCTTTACAGTAACGGTGCTGACACGCTTGAGAACTATGTTAACTTCGGTTACGAGGGCACAGCGAACCCTTATGGTATTGATAACATTTACCGTATGTGTAAGCTGCGACAAGCAAATGCTCAGTATCTTTACACAGTTACTCGCCCCGGTCAAGAGGGCTTTAACTGGGGTGTAGGTGCATTCGTGGGTACAATCCCGACTGCAATCTACCCGAACATTTGGTCACTACAATTCCGATTGGGTGACTTCGTTGATGGACAAGACCGCATGTGGCTGCTGTATGGCGGCTCTAACGTGACTTGGACAGAACAGGGCACTGGTCAACAAAAGAGTGCTCAGATTAGCTTTGGTGCGCATGTATCACGCTCTGGTGAGTTGATGTACTACCGTCGATTCAACAGTACTTACGTGTACGCACGTGTGCAGTTAGCAAGTCTGAGTGGTTGGCATCAAGTGCAACTAACGCAGGACGCGAACCACAACTGCACGATTACAGTTGATAAAGGTACGCCGAATGAACAGTCAGCTTCGTGCTCATTGAAGCTATGGGGTAAACAGTTTGACAGTGTATTATTCAACTGTGGCCCTGAGTGTGTGGGCACGACTGGCGTCCCTATTACTGATGTTTACGACAAGTCGTGGATTGGTAACATTGACATCCGTCGTTTCTACATCGACACGCACGGTACATTCAACGAGAACGTGATTCCGCGCTACTATGAGCAGCCGTACTTGAACATTGAGATTCAAGCTGAGGGCAGTAGCACGTGGCAGGACGTATCGAGTTCTTTGGTGAACTGGCCGCATGAGCAGGATAACCGCCGTTGTATTTACACACTGCCTGACGTACCTGATGGTCAGTACTTTATCCGGTACAAGACCAACTACGGTGTAAGTAACACGCTACCAGTGCGCATCAAGGGCGACATTAGCCGCAAGACTGAGTTGTATTCCGACTTCTCTGACTTGATTGAAATGCGTGAGAACTGGCTCGTTGCACATAAGCAATGGGGTGGTACTGGCGTTGTGGGCAACCAAACTGCGCTACTGAACGGTGGCGTGGTGCGTGAGAACGTTGAGGTTTACCCTGACTACTCTGATGTAGCAAACGCTGTGAAAGGTGTGCTGCGTCTACGTGGTCATGGCACGTACTACGATGGTGATGTCATCGGTGTTGACCGTATCGGACACCCTGCCCCTGATGGTCGTAAGACTGAGGTAGGTTCAGCACTGGTTACACGTGAGTACTTAGGGCCGGGCAGTTTCCGCTGTAAGTTGCGCTCTCCGTACCGGAAAGGTGCAGCGACAGCCTTGTGGACATTCCACTACGAGGAAATCTACGAGAACGACCCACGTTGGCAGAGCTTCTTGGACGAGGGCTTACACGCTCAAGGTAATGAGGACGATGGTTACTACATTGTGCGTAACCACGAGATTGACATCGAGTACCCGACTGCATTGAAAGATGCTGTGGATATGGAGGATGTATCGGCTGATAAAGCGCGTCTGAACACTTGGGAGGGTGAGCTACGTACTTGGGATTTACCAGAGAGTGACCCGAACTACTTCTCTGAATACACTGACTTCTTCGAGAAGTGGGTGGATGAGGCGTTGAGTGACGGTAAGTGGCACGAGATTCGTTTCGACTGGCACACTGGCGAACAGAACCCACCAGCAGGGAAACCTGCGAAACGTGTGGACTTCTACGTTGACGGTGTGTTGAAATGGACTAACACCACGCACATCCCTGACATTCCGGGTCGTCTATGGATTGCCCTTTGGTATCCACGCGCACCGGGCAACCGTTGGGCTGGACATAGTGCCGACTACATTTATGACTCGATTGACGTTGACTACTTCCACTACATCCCGTTCCCAGATGAACCAGTGCGCCAGTTAGGTGAAACATACCCTGCTGACGTATGGCGAGACTGGAAGTGGGAGAACTTCTTCTCCGGTTTCTACAACGAACTGCCACCACCGTATGAGCTACCTAAGCCATATGATGATGACATGCCGAAAGATGCCGATGGAACGTGGTTGCCAACGTCGTATCTAGCCGCTGGTAAGAACCCACCGCAGTACATCACACCATACCGATTGGAGTGGCGTAATGACCGCAAGTTGCAAGGCTCAGGTAACGGTGAATTCCAGTTCTTGAACCTAGTACAAGGTGCTCGTTACAAGATGACAATCAAGGTGGCGCGTACTTCAACTCAAGCCGCTGGTTTGCAGTTGGTGACATTCGAGCCGGGCAATGATGTAATCGACATCTCAATGTTCGAGGGTGATACCTATGAGTTGACTTTCATTGCGCAGAGTCAACAACGGGTAGCCTTGCGTCGTAACACAACAGACAATAAATACGAGGGTCTGACCGACATCCGGTTAGAGCGTATTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
08720cb9a658e1c42bef4c2b39044785cfe5eb0c4a114dc05d99ee62b6f1b25c
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2941
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50