Protein

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Genbank accession
QBJ00584.1 [GenBank]
Protein name
constituent protein
RBP type
TSP
Evidence DepoScope
Probability 0,54
Protein sequence
MAYQVYKVEKPKGVNFSLEPSQLDSTMWDEASEVSFKHGKTKKVSGYEQGLGQTGVLNDGSVYPEIILPLRDDTDENYWWAYASTKQDGTGEIYRIVTKDLHQDVTPATGIPNEPEFRWFGDTINGVPYFMKGKPYVWDGVSKFEELETFPGHVKAQVMRTYGNHMVAMDFKVDNFTPPSDPQTPEEEYQAKFSPWNEGRHRSAVWWSSAINTKDLSVSWADADPTTESGWNFLGGNGGPILGGKSLRESFIIYRERAVWQMSYIGGILVFAFKELFNDVGVLGPDCVAEIDGYHFVVGQSDIYMHNGVHKESVADGIVRQRIFDSIDPDHIDKVFVAVRYQEKEAWVCIPEASTNTNGRCNVAYVYNWEERHWSKRDMPDSLTSTYTILSITEGDITWTAPSESATWEEATDTWISSYFKYNSSQWGLAFAGVTSDGKGAVYTTIDEPTWDGANFKASVEKKWIDMEDYTTTKTLNKIWPLVRGGEIDVWVAGSETTTQSPAWRYVGRFDPNKRANLGCTATGKFIHVKFEIPEKSRAELRGYWLEYKATGAR
Physico‐chemical
properties
protein length:554 AA
molecular weight: 62754,16150 Da
isoelectric point:5,02828
aromaticity:0,13357
hydropathy:-0,53032

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QBJ00584.1
1 554
Domain Start End Length (AA) Confidence
N-terminal 1 61 61 0,9824
Central domain 62 260 200 0,2714
C-terminal 261 554 293 0,5672
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-61
Central
62-260
C-terminal
261-554

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage vB_VpP_BA6
[NCBI] 		2530170 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio parahaemolyticus
[NCBI] 		670 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QBJ00584.1 [NCBI]
Genbank nucleotide accession
MK483107 [NCBI]
CDS location
range 35273 -> 36937
strand -
CDS
ATGGCATACCAAGTTTATAAAGTTGAGAAACCAAAAGGTGTCAACTTTTCACTAGAGCCATCACAATTAGATTCTACTATGTGGGACGAGGCTAGTGAAGTCTCGTTTAAGCATGGTAAGACTAAGAAGGTATCTGGTTATGAACAAGGCTTAGGTCAAACTGGTGTTCTTAATGATGGTTCGGTATATCCTGAAATTATCCTCCCTTTGCGAGATGATACTGACGAGAACTACTGGTGGGCTTATGCCTCAACCAAACAAGATGGTACGGGTGAGATTTACCGTATCGTAACCAAAGACTTACACCAAGATGTTACACCAGCAACAGGTATTCCTAATGAGCCTGAATTCCGCTGGTTCGGCGATACAATCAATGGTGTTCCATACTTCATGAAAGGCAAGCCTTACGTGTGGGATGGAGTAAGTAAATTTGAAGAACTGGAAACATTCCCCGGACATGTTAAGGCTCAGGTTATGCGAACCTACGGCAACCACATGGTGGCTATGGACTTCAAGGTAGACAACTTCACACCTCCTTCTGACCCGCAAACGCCAGAAGAAGAATACCAAGCGAAGTTCAGCCCTTGGAATGAGGGACGTCACCGCTCTGCTGTATGGTGGTCTAGTGCTATCAACACAAAAGACTTAAGTGTTTCTTGGGCAGATGCAGACCCAACTACAGAGTCCGGTTGGAACTTTCTAGGTGGTAATGGTGGACCGATTCTTGGAGGTAAATCACTTCGAGAATCGTTCATCATTTACCGTGAACGTGCAGTATGGCAGATGTCATACATTGGCGGTATTTTAGTATTCGCCTTTAAGGAGTTGTTTAACGACGTAGGTGTACTTGGTCCAGACTGTGTGGCTGAGATTGATGGCTACCACTTTGTGGTTGGTCAATCAGACATCTATATGCACAATGGTGTACACAAAGAATCAGTAGCTGATGGTATTGTCCGTCAACGTATCTTTGATTCTATTGACCCAGACCATATTGACAAGGTATTCGTAGCAGTGCGTTACCAAGAGAAAGAGGCATGGGTATGTATTCCAGAAGCATCAACAAATACAAATGGTCGTTGTAACGTAGCATATGTATATAACTGGGAAGAACGTCACTGGTCTAAACGAGATATGCCAGATTCATTGACTTCTACTTATACTATCCTATCTATTACTGAGGGTGATATTACATGGACAGCGCCATCAGAAAGCGCTACATGGGAAGAAGCCACTGATACATGGATTAGTTCATACTTTAAGTATAACAGCTCACAGTGGGGCTTAGCGTTCGCTGGTGTTACCTCTGATGGTAAGGGTGCTGTATATACAACTATTGATGAACCGACTTGGGATGGTGCTAACTTTAAAGCTAGTGTAGAGAAGAAATGGATTGACATGGAAGACTATACAACCACTAAGACACTTAATAAGATTTGGCCTCTCGTTCGTGGTGGTGAGATTGATGTGTGGGTAGCTGGTAGTGAGACAACTACACAGTCTCCAGCTTGGAGATATGTTGGTAGGTTTGACCCTAATAAGCGAGCTAACCTAGGTTGTACAGCAACTGGTAAGTTCATTCACGTTAAGTTTGAAATCCCAGAGAAGAGTCGTGCAGAATTGCGGGGCTATTGGCTAGAATATAAAGCAACAGGAGCTAGATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
f66f5540c1b00d0b0846e3ebf525df09509900c8a13360953d1b595e81d5839a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8442
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genome Characterization of a Novel phage vB_VpP_BA6 lysing Vibrio parahaemolyticus Yang,M., Liang,Y. and Wu,Q. 2019-07-30 — GenBank