Protein

View in Explore
Genbank accession
AUR84349.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,93
Protein sequence
MAIKLTDEFGNRANPSSPAYPSGSLKDETNPGVSNDGSPLSSRVGNDFQGFMQSALAEAGIDANGNPDSVDNPQILNALKKIQENHASTYTDIVYKASGGNSAVENMIESFNLNPLMHAIGTYIKTGGTTWVYKDSTGPITLENFRAFNVINAIDFGAVPDYDRVNNTGTDNKENLQKCFDYCNTAKKIPLLIGDFGFKGQLTFSRYGITGSDKESDSLYQMDTSKTVSAIIYNNVGGYTTGRGKIKDITLGVQFGVNNGVIEVSTPSDGFAFESAQLRIGTSFGVGLKDSYYINFDNTVFQGKFIDNNDPTIGELLLGQGIKNLDGEEFNNLNFNKCYFQSLSQPVVGSGNNLKGTNTMQFTSCNFERVGDLPLQVRGWHANFTSCYFEKLDQNKSLNPDITGQDKLTKVASGGIGDLTFRNCLINAQDVDTIAKNPDVRLFTGQEQVFTFKNSILQKPDDYKGQVLNYPTYGDAPVLCLESSLGFVDQANGIWEHKNQDKTNVRSEASGKGQIAASPMYADATYAQASYKYATIPSDVSFSTSNPQPFGIIDGRNYNETLMINVEAQQTRINDTSGLVEQMDVKFSAVVAPSLPNYATIVNSSLKTSGSTMFEDADSLRGKIRCYRTTPERVTTPSESNQDPFAYQLAIVGEASPGSTPKILTTISKLEVVVIKNWGGRDLKLGVYQQSSDYAAPPSF
Physico‐chemical
properties
protein length:700 AA
molecular weight: 76209,82780 Da
isoelectric point:4,90000
aromaticity:0,09714
hydropathy:-0,41000

Domains

Domains [InterPro]
DC_0060
STR
1–700
DC_0060
AUR84349.1
1 700
Architecture
STR
STR 1-700
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AUR84349.1
1 700
Domain Start End Length (AA) Confidence
N-terminal 1 170 170 0,9854
Central domain 171 481 312 0,9874
C-terminal 482 700 218 0,9796
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-170
Central
171-481
C-terminal
482-700

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage 1.054.O._10N.261.52.A1
[NCBI] 		1881382 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio sp.
[NCBI] 		678 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AUR84349.1 [NCBI]
Genbank nucleotide accession
MG592434 [NCBI]
CDS location
range 26753 -> 28855
strand +
CDS
ATGGCAATTAAATTAACAGATGAATTTGGCAACAGAGCAAACCCTTCAAGCCCTGCATACCCAAGCGGCTCACTAAAAGACGAGACAAACCCAGGCGTATCAAATGATGGCTCGCCGCTATCATCTCGCGTTGGCAATGACTTCCAAGGCTTTATGCAGTCCGCACTTGCTGAGGCTGGAATTGATGCCAATGGTAATCCTGATAGTGTGGATAACCCTCAGATTTTAAATGCACTTAAAAAGATCCAAGAAAATCACGCATCAACATACACGGACATAGTTTACAAGGCTTCAGGTGGCAATTCTGCTGTTGAGAATATGATTGAATCTTTCAATCTAAACCCGCTAATGCACGCTATAGGAACTTACATAAAAACGGGTGGCACCACTTGGGTTTACAAGGACTCAACAGGCCCGATAACTTTAGAAAACTTTAGGGCGTTTAATGTAATCAATGCTATTGATTTTGGAGCAGTTCCAGACTACGACAGAGTTAACAACACTGGTACTGACAACAAAGAGAATCTGCAAAAGTGCTTTGACTACTGCAACACGGCAAAGAAAATACCTTTACTTATTGGTGATTTTGGCTTTAAAGGTCAGCTAACATTCTCAAGATATGGGATCACTGGTTCGGATAAAGAATCTGACTCTCTATATCAAATGGACACTTCAAAAACTGTGTCAGCAATCATTTATAACAATGTTGGCGGGTACACAACCGGACGTGGCAAGATTAAAGATATAACACTTGGCGTACAATTTGGCGTAAATAACGGAGTTATAGAGGTTAGCACGCCATCAGATGGGTTTGCGTTTGAATCAGCTCAACTAAGGATAGGCACATCATTTGGCGTCGGCCTAAAGGATAGTTATTACATAAACTTTGATAACACGGTATTCCAAGGTAAGTTTATAGATAATAACGACCCAACAATTGGCGAGTTACTATTAGGGCAAGGGATTAAGAACCTTGACGGTGAGGAGTTCAACAATCTCAACTTTAACAAGTGTTATTTTCAATCACTCTCTCAACCCGTTGTAGGTAGTGGTAACAACCTAAAAGGCACGAACACGATGCAGTTTACAAGCTGTAACTTTGAGCGTGTCGGGGATTTGCCATTACAGGTCAGAGGCTGGCACGCTAACTTTACCAGTTGTTACTTTGAGAAGTTAGACCAAAACAAATCTTTAAACCCTGACATTACAGGGCAAGACAAGTTAACAAAAGTTGCGTCTGGTGGTATTGGTGACTTAACGTTTAGGAACTGCCTAATAAATGCTCAGGACGTGGATACTATCGCAAAAAATCCCGATGTGAGACTTTTCACAGGTCAAGAGCAAGTATTTACATTTAAGAACTCAATACTTCAAAAACCTGATGACTACAAAGGTCAAGTGCTAAATTATCCTACTTACGGTGATGCGCCAGTGCTTTGTCTTGAGTCCAGTCTAGGGTTTGTTGATCAAGCTAACGGGATATGGGAGCATAAAAACCAAGATAAGACCAATGTAAGATCTGAAGCTTCAGGTAAAGGTCAAATCGCTGCTTCGCCCATGTATGCAGATGCAACCTACGCTCAAGCGTCATACAAGTACGCTACTATTCCATCTGATGTAAGCTTCAGCACATCAAACCCGCAACCATTCGGGATAATTGATGGAAGAAACTACAATGAAACATTAATGATAAATGTTGAAGCGCAGCAAACCAGAATAAATGATACTTCTGGTTTAGTTGAGCAAATGGACGTTAAGTTTAGTGCAGTGGTTGCACCAAGCTTGCCAAACTATGCAACAATTGTTAATTCCTCTTTAAAAACATCCGGCTCAACAATGTTCGAGGATGCTGACAGCTTAAGAGGTAAGATACGTTGCTACAGAACAACACCAGAGCGAGTAACAACTCCAAGCGAAAGCAATCAAGACCCTTTCGCCTACCAGCTGGCAATAGTCGGGGAAGCATCACCGGGCTCAACACCTAAGATACTAACCACAATTAGCAAGCTTGAAGTCGTGGTGATTAAAAACTGGGGCGGAAGAGATTTGAAACTTGGCGTTTACCAGCAGTCAAGTGACTATGCAGCCCCGCCATCGTTCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
5dc1b5b7b927e576f51eaa484c1739644d273e0793ea1fe1acf4a995d96120c3
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5889
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A major lineage of nontailed dsDNA viruses as unrecognized killers of marine bacteria Kauffman,K.M., Hussain,F.A., Yang,J., Arevalo,P., Brown,J.M., Chang,W.K., VanInsberghe,D., Elsherbini,J., Cutler,M.B., Kelly,L. and Polz,M.F. 2018-01-24 — GenBank